Guide to the Human Genome
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Name: LOC100288317 Sequence: fasta or formatted (213aa) NCBI GI: 239742373
Description:

PREDICTED: hypothetical protein XP_002342505

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            8.9         19           1
 D aspartate           0.0          0           0
 E glutamate           1.4          3           2
 F phenylalanine       0.9          2           1
 G glycine             0.9          2           1
 H histidine          14.6         31           1
 I isoleucine         21.1         45           1
 K lysine              0.0          0           0
 L leucine             0.0          0           0
 M methionine          1.9          4           1
 N asparagine          0.0          0           0
 P proline             0.9          2           2
 Q glutamine           0.0          0           0
 R arginine            0.5          1           1
 S serine              0.9          2           1
 T threonine          13.1         28           1
 V valine             11.3         24           1
 W tryptophan          0.0          0           0
 Y tyrosine           23.5         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342505 
LOC100131203          0.499   PREDICTED: hypothetical protein 
LOC100134332          0.480   PREDICTED: hypothetical protein, partial 
LOC100133515          0.478   PREDICTED: hypothetical protein 
LOC100129642          0.478   PREDICTED: hypothetical protein 
LOC100134411          0.475   PREDICTED: hypothetical protein 
LOC100133226          0.469   PREDICTED: hypothetical protein 
LOC100132016          0.463   PREDICTED: hypothetical protein 
LOC100134060          0.463   PREDICTED: hypothetical protein 
LOC100131203          0.461   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.461   PREDICTED: similar to serine/threonine-protein kina...
LOC100133173          0.433   PREDICTED: hypothetical protein 
LOC100134325          0.424   PREDICTED: hypothetical protein 
LOC100134139          0.418   PREDICTED: hypothetical protein 
LOC100132782          0.416   PREDICTED: hypothetical protein 
LOC100134279          0.416   PREDICTED: hypothetical protein, partial 
LOC100291751          0.414   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100129825          0.409   PREDICTED: hypothetical protein 
LOC100133776          0.407   PREDICTED: similar to hCG1820441 
LOC100133553          0.405   PREDICTED: hypothetical protein, partial 
LOC100133450          0.405   PREDICTED: hypothetical protein, partial 
LOC100287975          0.405   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129802          0.403   PREDICTED: hypothetical protein, partial 
LOC100132679          0.401   PREDICTED: hypothetical protein 
LOC100132107          0.401   PREDICTED: hypothetical protein 
LOC100134730          0.401   PREDICTED: hypothetical protein 
LOC100133807          0.401   PREDICTED: similar to serine/threonine-protein kina...
LOC100133975          0.401   PREDICTED: hypothetical protein, partial 
LOC100132983          0.399   PREDICTED: hypothetical protein 
LOC100129802          0.392   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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