Guide to the Human Genome
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Name: LOC100132107 Sequence: fasta or formatted (306aa) NCBI GI: 169172718
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          9           1
 C cysteine            3.9         12           1
 D aspartate           0.7          2           1
 E glutamate           2.3          7           2
 F phenylalanine       0.0          0           0
 G glycine             2.3          7           1
 H histidine          10.8         33           1
 I isoleucine         15.4         47           2
 K lysine              3.9         12           2
 L leucine             4.9         15           2
 M methionine          5.9         18           1
 N asparagine          1.6          5           1
 P proline             1.3          4           1
 Q glutamine           1.6          5           1
 R arginine            3.3         10           1
 S serine              3.3         10           2
 T threonine          10.5         32           1
 V valine              6.5         20           2
 W tryptophan          0.0          0           0
 Y tyrosine           19.0         58           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134060          0.315   PREDICTED: hypothetical protein 
LOC100131203          0.310   PREDICTED: hypothetical protein 
LOC100129642          0.307   PREDICTED: hypothetical protein 
LOC100132679          0.304   PREDICTED: hypothetical protein 
LOC100131203          0.299   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.299   PREDICTED: similar to serine/threonine-protein kina...
LOC100133226          0.296   PREDICTED: hypothetical protein 
LOC100288317          0.294   PREDICTED: hypothetical protein XP_002342505 
LOC100133515          0.291   PREDICTED: hypothetical protein 
LOC100134332          0.291   PREDICTED: hypothetical protein, partial 
LOC100133173          0.291   PREDICTED: hypothetical protein 
LOC100133553          0.279   PREDICTED: hypothetical protein, partial 
LOC100133844          0.274   PREDICTED: hypothetical protein 
LOC100132983          0.272   PREDICTED: hypothetical protein 
LOC100132782          0.272   PREDICTED: hypothetical protein 
LOC100291751          0.269   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134411          0.268   PREDICTED: hypothetical protein 
LOC100132016          0.263   PREDICTED: hypothetical protein 
LOC100129802          0.260   PREDICTED: hypothetical protein, partial 
LOC100133741          0.258   PREDICTED: hypothetical protein 
LOC100134730          0.257   PREDICTED: hypothetical protein 
LOC100132423          0.252   PREDICTED: hypothetical protein, partial 
LOC100133776          0.252   PREDICTED: similar to hCG1820441 
LOC100293369          0.250   PREDICTED: hypothetical protein 
LOC100290974          0.249   PREDICTED: hypothetical protein XP_002346910 
LOC100133807          0.249   PREDICTED: similar to serine/threonine-protein kina...
LOC100134395          0.243   PREDICTED: hypothetical protein, partial 
LOC100134279          0.243   PREDICTED: hypothetical protein, partial 
LOC100134139          0.243   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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