Guide to the Human Genome
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Name: LOC100129802 Sequence: fasta or formatted (179aa) NCBI GI: 239744631
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {180aa} PREDICTED: hypothetical protein, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          2           1
 C cysteine           10.1         18           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       1.7          3           1
 G glycine             0.0          0           0
 H histidine          13.4         24           1
 I isoleucine         17.9         32           1
 K lysine              0.0          0           0
 L leucine             1.1          2           1
 M methionine          7.3         13           1
 N asparagine          0.6          1           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            2.2          4           1
 S serine              0.0          0           0
 T threonine          10.1         18           1
 V valine             12.8         23           1
 W tryptophan          0.0          0           0
 Y tyrosine           21.8         39           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129802          0.580   PREDICTED: hypothetical protein, partial 
LOC100133226          0.531   PREDICTED: hypothetical protein 
LOC100132016          0.479   PREDICTED: hypothetical protein 
LOC100288317          0.474   PREDICTED: hypothetical protein XP_002342505 
LOC100134730          0.466   PREDICTED: hypothetical protein 
LOC100132782          0.461   PREDICTED: hypothetical protein 
LOC100133807          0.459   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.459   PREDICTED: hypothetical protein 
LOC100134411          0.456   PREDICTED: hypothetical protein 
LOC100134332          0.448   PREDICTED: hypothetical protein, partial 
LOC100134060          0.446   PREDICTED: hypothetical protein 
LOC100134139          0.446   PREDICTED: hypothetical protein 
LOC100129642          0.446   PREDICTED: hypothetical protein 
LOC100131203          0.438   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.438   PREDICTED: similar to serine/threonine-protein kina...
LOC100133450          0.436   PREDICTED: hypothetical protein, partial 
LOC100287975          0.436   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132983          0.436   PREDICTED: hypothetical protein 
LOC100129825          0.430   PREDICTED: hypothetical protein 
LOC100132679          0.418   PREDICTED: hypothetical protein 
LOC100134279          0.415   PREDICTED: hypothetical protein, partial 
LOC100132016          0.415   PREDICTED: hypothetical protein 
LOC100133553          0.415   PREDICTED: hypothetical protein, partial 
LOC100133173          0.412   PREDICTED: hypothetical protein 
LOC100134395          0.407   PREDICTED: hypothetical protein, partial 
LOC100133515          0.407   PREDICTED: hypothetical protein 
LOC100289649          0.405   PREDICTED: hypothetical protein XP_002342367 
LOC100133741          0.402   PREDICTED: hypothetical protein 
LOC100293574          0.399   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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