Guide to the Human Genome
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Name: LOC100134325 Sequence: fasta or formatted (205aa) NCBI GI: 239757884
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          3           1
 C cysteine            7.3         15           1
 D aspartate           1.0          2           1
 E glutamate           1.0          2           1
 F phenylalanine       1.5          3           2
 G glycine             0.5          1           1
 H histidine          11.7         24           1
 I isoleucine         16.6         34           1
 K lysine              0.5          1           1
 L leucine             0.5          1           1
 M methionine          3.9          8           1
 N asparagine          2.0          4           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            2.4          5           1
 S serine              2.0          4           2
 T threonine          16.1         33           1
 V valine              9.3         19           1
 W tryptophan          0.0          0           0
 Y tyrosine           22.4         46           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288317          0.451   PREDICTED: hypothetical protein XP_002342505 
LOC100134139          0.449   PREDICTED: hypothetical protein 
LOC100134060          0.431   PREDICTED: hypothetical protein 
LOC100133553          0.422   PREDICTED: hypothetical protein, partial 
LOC100131203          0.420   PREDICTED: hypothetical protein 
LOC100134411          0.413   PREDICTED: hypothetical protein 
LOC100134332          0.413   PREDICTED: hypothetical protein, partial 
LOC100131203          0.413   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.413   PREDICTED: similar to serine/threonine-protein kina...
LOC100129642          0.406   PREDICTED: hypothetical protein 
LOC100133226          0.406   PREDICTED: hypothetical protein 
LOC100132016          0.404   PREDICTED: hypothetical protein 
LOC100133741          0.395   PREDICTED: hypothetical protein 
LOC100132983          0.395   PREDICTED: hypothetical protein 
LOC100134279          0.388   PREDICTED: hypothetical protein, partial 
LOC100133450          0.388   PREDICTED: hypothetical protein, partial 
LOC100287975          0.388   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100133515          0.388   PREDICTED: hypothetical protein 
LOC100289649          0.385   PREDICTED: hypothetical protein XP_002342367 
LOC100133173          0.383   PREDICTED: hypothetical protein 
LOC100132679          0.379   PREDICTED: hypothetical protein 
LOC100133975          0.372   PREDICTED: hypothetical protein, partial 
LOC100132016          0.370   PREDICTED: hypothetical protein 
LOC100133807          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100134730          0.365   PREDICTED: hypothetical protein 
LOC100132423          0.365   PREDICTED: hypothetical protein, partial 
LOC100132782          0.365   PREDICTED: hypothetical protein 
LOC100134395          0.363   PREDICTED: hypothetical protein, partial 
LOC100129825          0.363   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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