Guide to the Human Genome
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Name: LOC100132423 Sequence: fasta or formatted (217aa) NCBI GI: 169205963
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          3           1
 C cysteine           11.1         24           1
 D aspartate           0.5          1           1
 E glutamate           0.5          1           1
 F phenylalanine       0.0          0           0
 G glycine             1.4          3           2
 H histidine          10.6         23           1
 I isoleucine         18.4         40           1
 K lysine              0.5          1           1
 L leucine             1.8          4           1
 M methionine          6.0         13           1
 N asparagine          0.9          2           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            1.4          3           1
 S serine              3.2          7           2
 T threonine          12.4         27           1
 V valine              7.8         17           1
 W tryptophan          0.0          0           0
 Y tyrosine           22.1         48           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100133450          0.436   PREDICTED: hypothetical protein, partial 
LOC100287975          0.436   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129642          0.425   PREDICTED: hypothetical protein 
LOC100131203          0.419   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.419   PREDICTED: similar to serine/threonine-protein kina...
LOC100133226          0.414   PREDICTED: hypothetical protein 
LOC100134411          0.412   PREDICTED: hypothetical protein 
LOC100134395          0.397   PREDICTED: hypothetical protein, partial 
LOC100131203          0.395   PREDICTED: hypothetical protein 
LOC100133515          0.385   PREDICTED: hypothetical protein 
LOC100291751          0.383   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134060          0.372   PREDICTED: hypothetical protein 
LOC100134353          0.368   PREDICTED: hypothetical protein 
LOC100134332          0.368   PREDICTED: hypothetical protein, partial 
LOC100132679          0.368   PREDICTED: hypothetical protein 
LOC100134139          0.366   PREDICTED: hypothetical protein 
LOC100288317          0.366   PREDICTED: hypothetical protein XP_002342505 
LOC100134730          0.366   PREDICTED: hypothetical protein 
LOC100132016          0.364   PREDICTED: hypothetical protein 
LOC100129825          0.362   PREDICTED: hypothetical protein 
LOC100134279          0.362   PREDICTED: hypothetical protein, partial 
LOC100129802          0.357   PREDICTED: hypothetical protein, partial 
LOC100294466          0.355   PREDICTED: hypothetical protein, partial 
LOC100132016          0.353   PREDICTED: hypothetical protein 
LOC100133553          0.353   PREDICTED: hypothetical protein, partial 
LOC100132782          0.351   PREDICTED: hypothetical protein 
LOC100133741          0.347   PREDICTED: hypothetical protein 
LOC100132983          0.347   PREDICTED: hypothetical protein 
LOC100128267          0.347   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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