Guide to the Human Genome
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Search of human proteins with 169160654

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169160654 PREDICTED: similar to small nuclear
ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote...   236   2e-63
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ...   225   7e-60
gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo ...    50   3e-07
gi|110681708 zinc finger protein 579 [Homo sapiens]                    49   1e-06
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i...    47   3e-06
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    47   3e-06
gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]      47   4e-06
gi|30061565 La ribonucleoprotein domain family member 2 isoform ...    45   1e-05
gi|30061569 La ribonucleoprotein domain family member 2 isoform ...    45   1e-05
gi|30061567 La ribonucleoprotein domain family member 2 isoform ...    45   1e-05
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]        44   3e-05
gi|61102725 la related protein isoform 2 [Homo sapiens]                44   3e-05
gi|39725634 la related protein isoform 1 [Homo sapiens]                44   3e-05
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         42   1e-04
gi|15055539 ribosomal protein S2 [Homo sapiens]                        40   3e-04
gi|47174861 peter pan homolog [Homo sapiens]                           39   0.001
gi|31652264 RNA binding motif protein 26 [Homo sapiens]                38   0.002
gi|239755681 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|239750150 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|28875797 small protein rich in arginine and glycine [Homo sap...    37   0.005
gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]               36   0.006
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]               36   0.006
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ...    35   0.010
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo...    35   0.013
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ...    34   0.022
gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]            33   0.038
gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]            33   0.038
gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]            33   0.038
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]                33   0.038

>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
           D1 polypeptide 16kDa [Homo sapiens]
          Length = 119

 Score =  236 bits (603), Expect = 2e-63
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI 60
           MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI
Sbjct: 1   MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI 60

Query: 61  RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
           RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
Sbjct: 61  RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119


>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
           [Homo sapiens]
          Length = 119

 Score =  225 bits (573), Expect = 7e-60
 Identities = 114/119 (95%), Positives = 115/119 (96%)

Query: 1   MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI 60
           MKLVRFLMKLSHETVTI LKN TQVHGT+TGVDVSMNTHLKAVKMT KNREPVQLETLSI
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
           RGNNIRYFIL DSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119


>gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo
           sapiens]
          Length = 126

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 8   MKLSHET----VTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSIRGN 63
           +K+ HE     VT          G +   + +MN  +  + +T ++    QLE + IRG+
Sbjct: 7   IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66

Query: 64  NIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRG-------RGRGRGRGRGRG 113
            IR+ IL D L    +L      +K+K + + AGRG+          RGRGRG GRG
Sbjct: 67  KIRFLILPDMLKNAPML----KSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRG 119


>gi|110681708 zinc finger protein 579 [Homo sapiens]
          Length = 562

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 81  VDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
           +D +P   ++      GRGRGRGRGRGRGRGRGRGG
Sbjct: 1   MDPQPPPPAQGSPPHRGRGRGRGRGRGRGRGRGRGG 36



 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 19/23 (82%), Positives = 19/23 (82%)

Query: 97  GRGRGRGRGRGRGRGRGRGGPRR 119
           GRGRGRGRGRGRGRGRG  G  R
Sbjct: 19  GRGRGRGRGRGRGRGRGGAGAPR 41



 Score = 38.9 bits (89), Expect = 0.001
 Identities = 17/19 (89%), Positives = 17/19 (89%)

Query: 100 RGRGRGRGRGRGRGRGGPR 118
           RGRGRGRGRGRGRGRG  R
Sbjct: 16  RGRGRGRGRGRGRGRGRGR 34


>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
           isoform [Homo sapiens]
          Length = 302

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 95  VAGRGRGRGRGRGRGRGRGRGGPR 118
           V GRGRGRGRGRGRGRGRGRG  R
Sbjct: 73  VCGRGRGRGRGRGRGRGRGRGRGR 96



 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/21 (95%), Positives = 20/21 (95%)

Query: 97  GRGRGRGRGRGRGRGRGRGGP 117
           GRGRGRGRGRGRGRGRGRG P
Sbjct: 77  GRGRGRGRGRGRGRGRGRGRP 97



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 11/43 (25%)

Query: 87  VKSKKREAVAGRGRGRGR-----------GRGRGRGRGRGGPR 118
           V   +RE   G GRGRGR           GRGRGRGRGRG  R
Sbjct: 46  VSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 17/20 (85%), Positives = 17/20 (85%)

Query: 97  GRGRGRGRGRGRGRGRGRGG 116
           GRGRGRGRGRGRGRGR   G
Sbjct: 81  GRGRGRGRGRGRGRGRPPSG 100



 Score = 32.3 bits (72), Expect = 0.085
 Identities = 16/22 (72%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 97  GRGRGRGRGRGR--GRGRGRGG 116
           GRGRGRGRGRGR    G G GG
Sbjct: 85  GRGRGRGRGRGRPPSGGSGLGG 106



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)

Query: 97  GRGRGRGRGRGRGRGRGRGG 116
           GRGRGRGR    G G G  G
Sbjct: 89  GRGRGRGRPPSGGSGLGGDG 108


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 95  VAGRGRGRGRGRGRGRGRGRGGPR 118
           V GRGRGRGRGRGRGRGRGRG  R
Sbjct: 73  VCGRGRGRGRGRGRGRGRGRGRGR 96



 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/21 (95%), Positives = 20/21 (95%)

Query: 97  GRGRGRGRGRGRGRGRGRGGP 117
           GRGRGRGRGRGRGRGRGRG P
Sbjct: 77  GRGRGRGRGRGRGRGRGRGRP 97



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 11/43 (25%)

Query: 87  VKSKKREAVAGRGRGRGR-----------GRGRGRGRGRGGPR 118
           V   +RE   G GRGRGR           GRGRGRGRGRG  R
Sbjct: 46  VSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 17/20 (85%), Positives = 17/20 (85%)

Query: 97  GRGRGRGRGRGRGRGRGRGG 116
           GRGRGRGRGRGRGRGR   G
Sbjct: 81  GRGRGRGRGRGRGRGRPPSG 100



 Score = 32.3 bits (72), Expect = 0.085
 Identities = 16/22 (72%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 97  GRGRGRGRGRGR--GRGRGRGG 116
           GRGRGRGRGRGR    G G GG
Sbjct: 85  GRGRGRGRGRGRPPSGGSGLGG 106



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)

Query: 97  GRGRGRGRGRGRGRGRGRGG 116
           GRGRGRGR    G G G  G
Sbjct: 89  GRGRGRGRPPSGGSGLGGDG 108


>gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]
          Length = 123

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 3   LVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSIRG 62
           L+  L  L     T+ L++ +  HG +  VD  MN  L  V  T +    V+L+ L + G
Sbjct: 17  LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76

Query: 63  NNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
            N+RY  + D + + T  ++ + ++  + R    G+G+GR
Sbjct: 77  RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRN-FGGKGQGR 114


>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
           [Homo sapiens]
          Length = 522

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 82  DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
           D +  V S + E   + G  RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167


>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
           [Homo sapiens]
          Length = 358

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 82  DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
           D +  V S + E   + G  RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167


>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
           [Homo sapiens]
          Length = 914

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 82  DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
           D +  V S + E   + G  RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167


>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
          Length = 139

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 7   LMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPV-QLETLSIRGNNI 65
           L    +  + + LKN    +G +   D  MN +L+ V  T ++ +   ++    IRG+ I
Sbjct: 7   LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66

Query: 66  RYFILLDSLPLDTLLVDVEPK---------VKSKKREAVAGRGRG--RGRGRGRGRGRGR 114
           +Y  + D + +D +  +V  K          K +K   + G GRG   GRGRG   G GR
Sbjct: 67  KYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGR 125

Query: 115 GGPRR 119
           G P +
Sbjct: 126 GQPEK 130


>gi|61102725 la related protein isoform 2 [Homo sapiens]
          Length = 1096

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 22/37 (59%), Positives = 22/37 (59%)

Query: 82  DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
           D    VKS          RGRGRGRGRGRGRGRGG R
Sbjct: 320 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 356


>gi|39725634 la related protein isoform 1 [Homo sapiens]
          Length = 1019

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 22/37 (59%), Positives = 22/37 (59%)

Query: 82  DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
           D    VKS          RGRGRGRGRGRGRGRGG R
Sbjct: 243 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 279


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 89  SKKREAVAGRGRG-RGRGRGRGRGRGRGGPR 118
           S+ R    GRGRG RGRG+G GRGRGRGG R
Sbjct: 319 SRGRGLSRGRGRGSRGRGKGMGRGRGRGGSR 349



 Score = 36.6 bits (83), Expect = 0.005
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 98  RGRGRGRGRGRGRGRGRGG 116
           RGRG+G GRGRGRG  RGG
Sbjct: 333 RGRGKGMGRGRGRGGSRGG 351



 Score = 32.3 bits (72), Expect = 0.085
 Identities = 13/17 (76%), Positives = 14/17 (82%)

Query: 97  GRGRGRGRGRGRGRGRG 113
           GRG+G GRGRGRG  RG
Sbjct: 334 GRGKGMGRGRGRGGSRG 350



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 86  KVKSKKREAVAGRGRG-RGRG-----RGRGRGRGRGGPRR 119
           K  S +     GRGRG RGRG     RGRG GRG  G  R
Sbjct: 231 KEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGR 270



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 86  KVKSKKREAVAGRGRGRG-RGRG-RGRGRGRG 115
           + K         RGRGRG RGRG RG  RGRG
Sbjct: 229 RAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRG 260



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 89  SKKREAVAGRGRGRGRGRGRGRGRGRGG 116
           S+ R    GRGRGRG  RG   G  +GG
Sbjct: 332 SRGRGKGMGRGRGRGGSRG---GMNKGG 356


>gi|15055539 ribosomal protein S2 [Homo sapiens]
          Length = 293

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 1/20 (5%)

Query: 98  RGRGRGRGRGRGRGRG-RGG 116
           RGRGRGRGRGRGRGRG RGG
Sbjct: 34  RGRGRGRGRGRGRGRGARGG 53



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 14/18 (77%), Positives = 15/18 (83%)

Query: 97  GRGRGRGRGRGRGRGRGR 114
           GRGRGRGRGRGRG   G+
Sbjct: 37  GRGRGRGRGRGRGARGGK 54



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 99  GRGRG-RGRGRGRGRGRGGPR 118
           G G G RGRGRGRGRGRG  R
Sbjct: 28  GFGSGIRGRGRGRGRGRGRGR 48


>gi|47174861 peter pan homolog [Homo sapiens]
          Length = 473

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 85  PKVKSKKREAVAGRG-RGRGRGRGRGRGRGRGGPR 118
           PK K K + A A RG RG  R  GRGRGRGR G R
Sbjct: 437 PKTKDKSQGAQARRGPRGASRDGGRGRGRGRPGKR 471


>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
          Length = 980

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 87  VKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
           + S +   +  RGRG   GRGRGRGRGRG P
Sbjct: 824 LSSGRGRGIHSRGRGAVHGRGRGRGRGRGVP 854



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 15/20 (75%), Positives = 15/20 (75%)

Query: 97  GRGRGRGRGRGRGRGRGRGG 116
           GRG   GRGRGRGRGRG  G
Sbjct: 836 GRGAVHGRGRGRGRGRGVPG 855



 Score = 33.1 bits (74), Expect = 0.050
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 84  EPKVKSKKREAVA-GRGRG---RGRGRGRGRGRGRGGPR 118
           E ++++ KR  ++ GRGRG   RGRG   GRGRGRG  R
Sbjct: 813 ELQLEAAKRGILSSGRGRGIHSRGRGAVHGRGRGRGRGR 851


>gi|239755681 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 506

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 96  AGRGRGRGRGRGRGRGRGRG 115
           +GRGRGRG+G+GRG  RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           GRGRG+G+GRG  RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 101 GRGRGRGRGRGRGRGGPR 118
           G GRGRGRG+G+GRG  R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453


>gi|239750150 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 506

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 96  AGRGRGRGRGRGRGRGRGRG 115
           +GRGRGRG+G+GRG  RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           GRGRG+G+GRG  RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 101 GRGRGRGRGRGRGRGGPR 118
           G GRGRGRG+G+GRG  R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453


>gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 506

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 96  AGRGRGRGRGRGRGRGRGRG 115
           +GRGRGRG+G+GRG  RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           GRGRG+G+GRG  RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 101 GRGRGRGRGRGRGRGGPR 118
           G GRGRGRG+G+GRG  R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453


>gi|28875797 small protein rich in arginine and glycine [Homo
           sapiens]
          Length = 248

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 17/23 (73%), Positives = 17/23 (73%)

Query: 97  GRGRGRGRGRGRGRGRGRGGPRR 119
           GRGRG   GRGRGRGRGRG   R
Sbjct: 186 GRGRGGFGGRGRGRGRGRGALAR 208



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 92  REAVAGRGRGRGRGRG 107
           R    GRGRGRGRGRG
Sbjct: 189 RGGFGGRGRGRGRGRG 204


>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 98  RGRGRGRGRGRGRGRGRGGPR 118
           R RGRGR +GRGRGR RG PR
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPR 761



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 16/22 (72%), Positives = 17/22 (77%)

Query: 97  GRGRGRGRGRGRGRGRGRGGPR 118
           GRGR +GRGRGR RGR RG  R
Sbjct: 744 GRGRPKGRGRGRPRGRPRGSKR 765



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 88  KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
           +S    ++ G    R RGRGR +GRGRG PR
Sbjct: 727 QSANSSSMNGLSSLRKRGRGRPKGRGRGRPR 757



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 89  SKKREAVAGRGRGRGRGRGRGRGRG 113
           S  R+   GR +GRGRGR RGR RG
Sbjct: 738 SSLRKRGRGRPKGRGRGRPRGRPRG 762



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 90  KKREAVAGRGRGRGRGRGRGRGRGR 114
           +KR     +GRGRGR RGR RG  R
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPRGSKR 765



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 87  VKSKKREAVAGRGRGRGRGRGRGRGR 112
           ++ + R    GRGRGR RGR RG  R
Sbjct: 740 LRKRGRGRPKGRGRGRPRGRPRGSKR 765


>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 98  RGRGRGRGRGRGRGRGRGGPR 118
           R RGRGR +GRGRGR RG PR
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPR 761



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 16/22 (72%), Positives = 17/22 (77%)

Query: 97  GRGRGRGRGRGRGRGRGRGGPR 118
           GRGR +GRGRGR RGR RG  R
Sbjct: 744 GRGRPKGRGRGRPRGRPRGSKR 765



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 88  KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
           +S    ++ G    R RGRGR +GRGRG PR
Sbjct: 727 QSANSSSMNGLSSLRKRGRGRPKGRGRGRPR 757



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 89  SKKREAVAGRGRGRGRGRGRGRGRG 113
           S  R+   GR +GRGRGR RGR RG
Sbjct: 738 SSLRKRGRGRPKGRGRGRPRGRPRG 762



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 90  KKREAVAGRGRGRGRGRGRGRGRGR 114
           +KR     +GRGRGR RGR RG  R
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPRGSKR 765



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 87  VKSKKREAVAGRGRGRGRGRGRGRGR 112
           ++ + R    GRGRGR RGR RG  R
Sbjct: 740 LRKRGRGRPKGRGRGRPRGRPRGSKR 765


>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
          sapiens]
          Length = 95

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 1  MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREP--VQLETL 58
          M    F   L  + V + LKN   + GT+  VD  +N  L  + +T   + P  + ++  
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 59 SIRGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAV 95
           IRG+ +RY      LP D   VD +    + ++EA+
Sbjct: 61 FIRGSVVRYV----QLPADE--VDTQLLQDAARKEAL 91


>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
            sapiens]
          Length = 1802

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 19/23 (82%), Positives = 19/23 (82%), Gaps = 3/23 (13%)

Query: 97   GRGRG-RGRGRG--RGRGRGRGG 116
            GRGRG RGRG G  RGRGRGRGG
Sbjct: 1691 GRGRGSRGRGGGGTRGRGRGRGG 1713



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 17/21 (80%), Positives = 17/21 (80%), Gaps = 2/21 (9%)

Query: 99   GRGRGRGRGRG-RGRGRGGPR 118
            GRGRG GRGRG RGRG GG R
Sbjct: 1686 GRGRG-GRGRGSRGRGGGGTR 1705



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 89   SKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
            S+ R     RGRGRGRG   GRG  RG  R
Sbjct: 1696 SRGRGGGGTRGRGRGRG---GRGASRGATR 1722



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/29 (48%), Positives = 14/29 (48%)

Query: 91   KREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
            K     GRGR    GR    GRGRGG  R
Sbjct: 1666 KTRGTGGRGRWGRWGRWSRGGRGRGGRGR 1694


>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
           sapiens]
          Length = 482

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 18/34 (52%), Positives = 18/34 (52%)

Query: 86  KVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
           K  SK RE    R RGR R R R R RGRG   R
Sbjct: 409 KRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSR 442



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 88  KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
           +S+ R   + R R +   R R RGR R G R
Sbjct: 442 RSRSRSRRSRRSRSQSSSRSRSRGRRRSGNR 472


>gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 638

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 15/18 (83%), Positives = 15/18 (83%)

Query: 97  GRGRGRGRGRGRGRGRGR 114
           G  RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)

Query: 99  GRGRGRGRGRGRGRGRG 115
           G  RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 14/19 (73%), Positives = 14/19 (73%)

Query: 101 GRGRGRGRGRGRGRGGPRR 119
           G  RG GRGRGRGRG  RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443


>gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 638

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 15/18 (83%), Positives = 15/18 (83%)

Query: 97  GRGRGRGRGRGRGRGRGR 114
           G  RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)

Query: 99  GRGRGRGRGRGRGRGRG 115
           G  RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 14/19 (73%), Positives = 14/19 (73%)

Query: 101 GRGRGRGRGRGRGRGGPRR 119
           G  RG GRGRGRGRG  RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443


>gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 638

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 15/18 (83%), Positives = 15/18 (83%)

Query: 97  GRGRGRGRGRGRGRGRGR 114
           G  RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)

Query: 99  GRGRGRGRGRGRGRGRG 115
           G  RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 14/19 (73%), Positives = 14/19 (73%)

Query: 101 GRGRGRGRGRGRGRGGPRR 119
           G  RG GRGRGRGRG  RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443


>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
          Length = 397

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 12/23 (52%), Positives = 21/23 (91%)

Query: 97  GRGRGRGRGRGRGRGRGRGGPRR 119
           G+G+G+G+G+G+G+G+G+G  RR
Sbjct: 185 GQGQGQGQGQGQGQGQGQGQGRR 207



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 10/19 (52%), Positives = 19/19 (100%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           G+G+G+G+G+G+G+G+G+G
Sbjct: 179 GQGQGQGQGQGQGQGQGQG 197



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 10/19 (52%), Positives = 19/19 (100%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           G+G+G+G+G+G+G+G+G+G
Sbjct: 181 GQGQGQGQGQGQGQGQGQG 199



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 10/19 (52%), Positives = 19/19 (100%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           G+G+G+G+G+G+G+G+G+G
Sbjct: 183 GQGQGQGQGQGQGQGQGQG 201



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 10/19 (52%), Positives = 17/19 (89%)

Query: 97  GRGRGRGRGRGRGRGRGRG 115
           G+G+G+G+G+G+G+GR  G
Sbjct: 191 GQGQGQGQGQGQGQGRRPG 209



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 8/18 (44%), Positives = 16/18 (88%)

Query: 98  RGRGRGRGRGRGRGRGRG 115
           +  G+G+G+G+G+G+G+G
Sbjct: 176 QAEGQGQGQGQGQGQGQG 193


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,356,032
Number of Sequences: 37866
Number of extensions: 191104
Number of successful extensions: 3537
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 878
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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