Guide to the Human Genome
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Name: LOC100129053 Sequence: fasta or formatted (638aa) NCBI GI: 169203160
Description:

PREDICTED: hypothetical protein

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt mRNA [638aa] PREDICTED: hypothetical protein
alt mRNA [638aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         49           2
 C cysteine            2.4         15           3
 D aspartate           4.2         27           2
 E glutamate           5.3         34           2
 F phenylalanine       3.8         24           1
 G glycine             8.3         53           3
 H histidine           3.1         20           1
 I isoleucine          3.4         22           1
 K lysine              4.5         29           4
 L leucine             7.8         50           2
 M methionine          2.7         17           1
 N asparagine          3.3         21           1
 P proline             8.6         55           2
 Q glutamine           4.1         26           2
 R arginine            6.4         41           2
 S serine              6.7         43           2
 T threonine           6.3         40           2
 V valine              5.6         36           2
 W tryptophan          2.2         14           1
 Y tyrosine            3.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129053          1.000   PREDICTED: hypothetical protein 
LOC100129053          1.000   PREDICTED: hypothetical protein 
LOC390245             0.630   PREDICTED: hypothetical protein 
LOC390245             0.629   PREDICTED: hypothetical protein 
LOC390245             0.629   PREDICTED: hypothetical protein 
KDM4D                 0.518   jumonji domain containing 2D 
KDM4B                 0.398   jumonji domain containing 2B 
KDM4C                 0.368   jumonji domain containing 2C isoform 3 
KDM4C                 0.368   jumonji domain containing 2C isoform 4 
KDM4C                 0.368   jumonji domain containing 2C isoform 2 
KDM4C                 0.368   jumonji domain containing 2C isoform 1 
KDM4A                 0.362   jumonji domain containing 2A 
KDM5A                 0.094   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.094   retinoblastoma binding protein 2 isoform 2 
KDM5D                 0.086   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.085   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.085   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.085   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.085   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5B                 0.081   jumonji, AT rich interactive domain 1B 
LOC100133760          0.081   PREDICTED: similar to Jumonji, AT rich interactive ...
JARID2                0.048   jumonji, AT rich interactive domain 2 protein 
SRCAP                 0.011   Snf2-related CBP activator protein 
ANKRD33B              0.011   PREDICTED: ankyrin repeat domain 33B 
ARHGEF5               0.011   rho guanine nucleotide exchange factor 5 
NFATC2IP              0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
ZNF579                0.009   zinc finger protein 579 
PRR12                 0.009   proline rich 12 
WNK1                  0.008   WNK lysine deficient protein kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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