Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LARP1B Sequence: fasta or formatted (358aa) NCBI GI: 30061569
Description:

La ribonucleoprotein domain family member 2 isoform 3

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [522aa] La ribonucleoprotein domain family member 2 isoform 2
alt prot [914aa] La ribonucleoprotein domain family member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          9           1
 C cysteine            0.8          3           1
 D aspartate           5.6         20           2
 E glutamate           9.2         33           2
 F phenylalanine       4.7         17           2
 G glycine             7.5         27           2
 H histidine           1.4          5           1
 I isoleucine          3.6         13           1
 K lysine              6.1         22           2
 L leucine             5.9         21           2
 M methionine          1.4          5           2
 N asparagine          6.7         24           2
 P proline             6.1         22           3
 Q glutamine           5.6         20           1
 R arginine            9.5         34           2
 S serine              8.1         29           2
 T threonine           4.5         16           2
 V valine              5.9         21           2
 W tryptophan          1.1          4           1
 Y tyrosine            3.6         13           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   La ribonucleoprotein domain family member 2 isoform ... 
LARP1B                0.920   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.920   La ribonucleoprotein domain family member 2 isoform ...
LARP1                 0.376   la related protein isoform 2 
LARP1                 0.376   la related protein isoform 1 
LOC644578             0.185   PREDICTED: similar to hCG2040199 
LOC644578             0.185   PREDICTED: similar to hCG2040199 
LOC644578             0.185   PREDICTED: similar to hCG2040199 
LARP4                 0.062   c-Mpl binding protein isoform a 
LARP4                 0.062   c-Mpl binding protein isoform c 
LARP4                 0.062   c-Mpl binding protein isoform b 
SSB                   0.048   autoantigen La 
THRAP3                0.039   thyroid hormone receptor associated protein 3 [Homo...
LARP4B                0.039   La ribonucleoprotein domain family, member 4B 
LARP6                 0.039   La ribonucleoprotein domain family, member 6 isoform...
LOC100286959          0.035   PREDICTED: hypothetical protein XP_002343921 
LARP7                 0.034   La ribonucleoprotein domain family, member 7 
LARP7                 0.034   La ribonucleoprotein domain family, member 7 
TRAF3IP1              0.031   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.031   TNF receptor-associated factor 3 interacting protein...
LOC100129492          0.028   PREDICTED: similar to small nuclear ribonucleoprote...
SNRPD1                0.028   small nuclear ribonucleoprotein D1 polypeptide 16kDa ...
MBD2                  0.028   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.028   methyl-CpG binding domain protein 2 isoform 1 
SNRNP70               0.027   U1 small nuclear ribonucleoprotein 70 kDa 
FLJ37078              0.027   hypothetical protein LOC222183 
RSRC1                 0.025   arginine/serine-rich coiled-coil 1 
ZRANB2                0.025   zinc finger protein 265 isoform 2 
CIR1                  0.025   CBF1 interacting corepressor 
RBM25                 0.024   RNA binding motif protein 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press