LARP1 27193

Name: LARP1	Sequence: fasta or formatted (1019aa)		NCBI GI: 39725634
Description: la related protein isoform 1		Referenced in: RNA-binding Proteins
Other entries for this name: alt prot [1096aa] la related protein isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 50 3 C cysteine 0.7 7 1 D aspartate 5.7 58 2 E glutamate 8.4 86 2 F phenylalanine 4.4 45 2 G glycine 6.4 65 5 H histidine 2.5 25 1 I isoleucine 2.8 29 1 K lysine 8.1 83 3 L leucine 6.6 67 2 M methionine 1.7 17 1 N asparagine 3.0 31 2 P proline 9.9 101 2 Q glutamine 4.9 50 2 R arginine 7.9 80 3 S serine 7.7 78 3 T threonine 5.3 54 2 V valine 4.7 48 2 W tryptophan 1.3 13 1 Y tyrosine 3.1 32 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 la related protein isoform 1 LARP1 0.934 la related protein isoform 2 LARP1B 0.486 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.234 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.128 La ribonucleoprotein domain family member 2 isoform ... LOC644578 0.036 PREDICTED: similar to hCG2040199 LOC644578 0.036 PREDICTED: similar to hCG2040199 LOC644578 0.036 PREDICTED: similar to hCG2040199 LARP4 0.023 c-Mpl binding protein isoform a LARP4 0.023 c-Mpl binding protein isoform c LARP4 0.023 c-Mpl binding protein isoform b SSB 0.020 autoantigen La LARP7 0.016 La ribonucleoprotein domain family, member 7 LARP7 0.016 La ribonucleoprotein domain family, member 7 LARP4B 0.014 La ribonucleoprotein domain family, member 4B LARP6 0.014 La ribonucleoprotein domain family, member 6 isoform... PHF2 0.011 PHD finger protein 2 BAT2 0.010 HLA-B associated transcript-2 LOC100129492 0.009 PREDICTED: similar to small nuclear ribonucleoprote... SNRPD1 0.009 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... EIF4G1 0.009 eukaryotic translation initiation factor 4 gamma, 1 ... EIF4G1 0.009 eukaryotic translation initiation factor 4 gamma, 1 ... EIF4G1 0.009 eukaryotic translation initiation factor 4 gamma, 1 ... EIF4G1 0.009 eukaryotic translation initiation factor 4 gamma, 1 ... EIF4G1 0.009 eukaryotic translation initiation factor 4 gamma, 1 ... PNN 0.008 pinin, desmosome associated protein RPS2 0.008 ribosomal protein S2 ZNF579 0.008 zinc finger protein 579 TTN 0.008 titin isoform N2-A PCLO 0.008 piccolo isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.