Guide to the Human Genome
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Name: ZRSR2 Sequence: fasta or formatted (482aa) NCBI GI: 4827046
Description:

U2 small nuclear RNA auxiliary factor 1-like 2

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         18           2
 C cysteine            2.3         11           1
 D aspartate           4.1         20           2
 E glutamate          13.1         63           4
 F phenylalanine       4.1         20           1
 G glycine             4.6         22           1
 H histidine           2.5         12           2
 I isoleucine          1.5          7           1
 K lysine              8.9         43           2
 L leucine             5.8         28           2
 M methionine          1.7          8           1
 N asparagine          4.1         20           2
 P proline             3.9         19           2
 Q glutamine           6.2         30           2
 R arginine           14.7         71           3
 S serine              9.5         46           3
 T threonine           2.9         14           2
 V valine              2.3         11           1
 W tryptophan          1.2          6           1
 Y tyrosine            2.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   U2 small nuclear RNA auxiliary factor 1-like 2 
U2AF1                 0.116   U2 small nuclear RNA auxillary factor 1 isoform b [H...
U2AF1                 0.112   U2 small nuclear RNA auxillary factor 1 isoform a [Ho...
LOC441722             0.085   PREDICTED: similar to U2 small nuclear RNA auxillary...
U2AF1L4               0.084   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
LOC441722             0.083   PREDICTED: similar to U2 small nuclear RNA auxillary...
U2AF1                 0.066   U2 small nuclear RNA auxillary factor 1 isoform c [H...
RSRC2                 0.064   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.061   arginine/serine-rich coiled-coil 2 isoform a 
FUSIP1                0.058   FUS interacting protein (serine-arginine rich) 1 iso...
CROP                  0.054   cisplatin resistance-associated overexpressed protei...
CROP                  0.054   cisplatin resistance-associated overexpressed protei...
LOC283685             0.051   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CHERP                 0.051   calcium homeostasis endoplasmic reticulum protein [...
LOC100133599          0.051   PREDICTED: hypothetical protein 
LOC400352             0.050   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.050   PREDICTED: similar to Putative golgin subfamily A m...
TCHH                  0.050   trichohyalin 
SFRS2                 0.050   splicing factor, arginine/serine-rich 2 
GIGYF2                0.049   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.049   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.049   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.049   GRB10 interacting GYF protein 2 isoform b 
BAT2D1                0.049   HBxAg transactivated protein 2 
DDX46                 0.049   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
LOC440243             0.048   PREDICTED: Putative golgin subfamily A member 6-lik...
SFRS12                0.048   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.048   splicing factor, arginine/serine-rich 12 isoform b [...
INCENP                0.048   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.048   inner centromere protein antigens 135/155kDa isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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