Guide to the Human Genome
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Name: LOC390245 Sequence: fasta or formatted (506aa) NCBI GI: 239755681
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {506aa} PREDICTED: hypothetical protein
alt mRNA {506aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         33           2
 C cysteine            2.4         12           2
 D aspartate           3.4         17           2
 E glutamate           6.1         31           2
 F phenylalanine       4.0         20           1
 G glycine             8.9         45           2
 H histidine           4.0         20           1
 I isoleucine          3.6         18           1
 K lysine              4.0         20           4
 L leucine             8.1         41           2
 M methionine          3.0         15           1
 N asparagine          3.6         18           1
 P proline             6.3         32           2
 Q glutamine           5.7         29           2
 R arginine            6.1         31           2
 S serine              6.9         35           2
 T threonine           6.9         35           2
 V valine              4.7         24           2
 W tryptophan          2.0         10           1
 Y tyrosine            4.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC390245             1.000   PREDICTED: hypothetical protein 
LOC390245             0.998   PREDICTED: hypothetical protein 
LOC100129053          0.797   PREDICTED: hypothetical protein 
LOC100129053          0.797   PREDICTED: hypothetical protein 
LOC100129053          0.797   PREDICTED: hypothetical protein 
KDM4D                 0.618   jumonji domain containing 2D 
KDM4B                 0.499   jumonji domain containing 2B 
KDM4C                 0.466   jumonji domain containing 2C isoform 3 
KDM4C                 0.466   jumonji domain containing 2C isoform 4 
KDM4C                 0.466   jumonji domain containing 2C isoform 2 
KDM4C                 0.466   jumonji domain containing 2C isoform 1 
KDM4A                 0.455   jumonji domain containing 2A 
KDM5A                 0.121   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.121   retinoblastoma binding protein 2 isoform 2 
KDM5D                 0.115   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.113   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.113   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.112   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.112   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5B                 0.104   jumonji, AT rich interactive domain 1B 
LOC100133760          0.104   PREDICTED: similar to Jumonji, AT rich interactive ...
JARID2                0.053   jumonji, AT rich interactive domain 2 protein 
MBD2                  0.013   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.013   methyl-CpG binding domain protein 2 isoform 1 
LOC100129492          0.012   PREDICTED: similar to small nuclear ribonucleoprote...
SNRPD1                0.012   small nuclear ribonucleoprotein D1 polypeptide 16kDa ...
ZNF579                0.012   zinc finger protein 579 
MESP2                 0.010   mesoderm posterior 2 homolog 
SSPO                  0.010   SCO-spondin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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