Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WNT8B Sequence: fasta or formatted (351aa) NCBI GI: 110735437
Description:

wingless-type MMTV integration site family, member 8B precursor

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         32           2
 C cysteine            6.8         24           2
 D aspartate           3.7         13           2
 E glutamate           6.0         21           2
 F phenylalanine       3.4         12           1
 G glycine            10.3         36           2
 H histidine           2.8         10           1
 I isoleucine          2.0          7           1
 K lysine              4.6         16           1
 L leucine             8.8         31           2
 M methionine          1.4          5           1
 N asparagine          4.0         14           2
 P proline             2.3          8           1
 Q glutamine           3.4         12           1
 R arginine            9.1         32           3
 S serine              8.0         28           3
 T threonine           4.8         17           2
 V valine              4.8         17           1
 W tryptophan          2.3          8           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member ... 
WNT8A                 0.631   wingless-type MMTV integration site family, member 8...
WNT7B                 0.325   wingless-type MMTV integration site family, member 7...
WNT7A                 0.325   wingless-type MMTV integration site family, member 7...
WNT4                  0.321   wingless-type MMTV integration site family, member 4...
WNT2                  0.313   wingless-type MMTV integration site family member 2 p...
WNT2B                 0.313   wingless-type MMTV integration site family, member 2...
WNT2B                 0.313   wingless-type MMTV integration site family, member 2...
WNT5A                 0.309   wingless-type MMTV integration site family, member 5...
WNT5B                 0.306   wingless-type MMTV integration site family, member 5...
WNT5B                 0.306   wingless-type MMTV integration site family, member 5...
WNT1                  0.300   wingless-type MMTV integration site family, member 1 ...
WNT3                  0.292   wingless-type MMTV integration site family, member 3...
WNT3A                 0.289   wingless-type MMTV integration site family, member 3...
WNT16                 0.275   wingless-type MMTV integration site family, member 1...
WNT16                 0.275   wingless-type MMTV integration site family, member 1...
WNT6                  0.268   wingless-type MMTV integration site family, member 6...
WNT9A                 0.259   wingless-type MMTV integration site family, member 9...
WNT11                 0.252   wingless-type MMTV integration site family, member 1...
WNT10A                0.249   wingless-type MMTV integration site family, member 1...
WNT9B                 0.248   wingless-type MMTV integration site family, member 9...
WNT10B                0.239   wingless-type MMTV integration site family, member 1...
LOC100289775          0.150   PREDICTED: hypothetical protein XP_002348164 
LIMCH1                0.007   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform a [Homo...
HPN                   0.006   hepsin 
HPN                   0.006   hepsin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press