LIMCH1 6606

Name: LIMCH1	Sequence: fasta or formatted (1057aa)		NCBI GI: 163310743
Description: LIM and calponin homology domains 1 isoform b		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [1083aa] LIM and calponin homology domains 1 isoform a alt prot [1056aa] LIM and calponin homology domains 1 isoform c alt prot [902aa] LIM and calponin homology domains 1 isoform d alt prot [890aa] LIM and calponin homology domains 1 isoform e
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 52 2 C cysteine 1.6 17 1 D aspartate 6.1 64 2 E glutamate 9.9 105 4 F phenylalanine 2.6 27 1 G glycine 5.3 56 2 H histidine 1.7 18 1 I isoleucine 3.3 35 2 K lysine 8.1 86 3 L leucine 8.5 90 3 M methionine 1.7 18 1 N asparagine 3.9 41 2 P proline 6.9 73 3 Q glutamine 5.5 58 2 R arginine 6.6 70 3 S serine 10.4 110 4 T threonine 5.7 60 3 V valine 4.5 48 2 W tryptophan 1.0 11 1 Y tyrosine 1.7 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM and calponin homology domains 1 isoform b [Homo... LIMCH1 0.997 LIM and calponin homology domains 1 isoform c [Homo... LIMCH1 0.993 LIM and calponin homology domains 1 isoform a [Homo... LIMCH1 0.844 LIM and calponin homology domains 1 isoform d [Homo... LIMCH1 0.828 LIM and calponin homology domains 1 isoform e [Homo... LMO7 0.198 LIM domain only 7 isoform 1 LMO7 0.064 LIM domain only 7 isoform 2 CNN1 0.023 calponin 1, basic, smooth muscle CNN3 0.023 calponin 3 CNN2 0.020 calponin 2 isoform b CNN2 0.019 calponin 2 isoform a LOC283685 0.017 PREDICTED: golgi autoantigen, golgin subfamily a-li... CROCC 0.016 ciliary rootlet coiled-coil NEFH 0.015 neurofilament, heavy polypeptide 200kDa MAP7 0.014 microtubule-associated protein 7 SCEL 0.014 sciellin isoform 3 SCEL 0.014 sciellin isoform 1 SCEL 0.014 sciellin isoform 2 LOC283685 0.014 PREDICTED: golgi autoantigen, golgin subfamily a-li... NEFM 0.014 neurofilament, medium polypeptide 150kDa isoform 1 ... CALD1 0.014 caldesmon 1 isoform 1 MAP7D2 0.013 MAP7 domain containing 2 TCHH 0.012 trichohyalin CDC2L2 0.011 cell division cycle 2-like 2 isoform 4 CDC2L2 0.011 cell division cycle 2-like 2 isoform 1 CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... WDR87 0.011 NYD-SP11 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.