Guide to the Human Genome
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Name: WNT16 Sequence: fasta or formatted (365aa) NCBI GI: 17402916
Description:

wingless-type MMTV integration site family, member 16 isoform 1 precursor

Referenced in:

Wnt Signals

Other entries for this name:
alt prot [355aa] wingless-type MMTV integration site family, member 16 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         27           3
 C cysteine            6.8         25           2
 D aspartate           3.8         14           2
 E glutamate           5.5         20           1
 F phenylalanine       2.7         10           1
 G glycine             9.0         33           2
 H histidine           2.7         10           1
 I isoleucine          3.6         13           1
 K lysine              6.8         25           2
 L leucine             8.8         32           2
 M methionine          3.3         12           1
 N asparagine          4.7         17           2
 P proline             3.0         11           1
 Q glutamine           2.7         10           1
 R arginine            6.8         25           3
 S serine              6.8         25           2
 T threonine           5.2         19           2
 V valine              4.9         18           2
 W tryptophan          2.5          9           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 1... 
WNT16                 0.914   wingless-type MMTV integration site family, member 1...
WNT7B                 0.397   wingless-type MMTV integration site family, member 7...
WNT4                  0.392   wingless-type MMTV integration site family, member 4...
WNT7A                 0.384   wingless-type MMTV integration site family, member 7...
WNT2B                 0.372   wingless-type MMTV integration site family, member 2...
WNT2B                 0.361   wingless-type MMTV integration site family, member 2...
WNT5B                 0.356   wingless-type MMTV integration site family, member 5...
WNT5B                 0.356   wingless-type MMTV integration site family, member 5...
WNT3A                 0.352   wingless-type MMTV integration site family, member 3...
WNT2                  0.345   wingless-type MMTV integration site family member 2 p...
WNT3                  0.345   wingless-type MMTV integration site family, member 3...
WNT5A                 0.340   wingless-type MMTV integration site family, member 5...
WNT1                  0.332   wingless-type MMTV integration site family, member 1 ...
WNT11                 0.311   wingless-type MMTV integration site family, member 1...
WNT9B                 0.296   wingless-type MMTV integration site family, member 9...
WNT6                  0.292   wingless-type MMTV integration site family, member 6...
WNT10A                0.279   wingless-type MMTV integration site family, member 1...
WNT10B                0.270   wingless-type MMTV integration site family, member 1...
WNT8A                 0.264   wingless-type MMTV integration site family, member 8...
WNT9A                 0.263   wingless-type MMTV integration site family, member 9...
WNT8B                 0.263   wingless-type MMTV integration site family, member ...
LOC100289775          0.162   PREDICTED: hypothetical protein XP_002348164 
LOC100293688          0.035   PREDICTED: similar to hCG2042405 
LOC100290987          0.035   PREDICTED: hypothetical protein XP_002347812 
LOC100288061          0.035   PREDICTED: hypothetical protein XP_002343602 
SLC2A9                0.008   solute carrier family 2, member 9 protein isoform 1 ...
SLC2A9                0.007   solute carrier family 2, member 9 protein isoform 2 ...
CXorf15               0.007   gamma-taxilin 
KRTAP5-8              0.007   keratin associated protein 5-8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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