Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LIMCH1 Sequence: fasta or formatted (1056aa) NCBI GI: 163310745
Description:

LIM and calponin homology domains 1 isoform c

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [1083aa] LIM and calponin homology domains 1 isoform a
alt prot [1057aa] LIM and calponin homology domains 1 isoform b
alt prot [902aa] LIM and calponin homology domains 1 isoform d
alt prot [890aa] LIM and calponin homology domains 1 isoform e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         52           2
 C cysteine            1.6         17           1
 D aspartate           6.1         64           2
 E glutamate           9.9        105           4
 F phenylalanine       2.6         27           1
 G glycine             5.3         56           2
 H histidine           1.7         18           1
 I isoleucine          3.3         35           2
 K lysine              8.1         86           3
 L leucine             8.5         90           3
 M methionine          1.7         18           1
 N asparagine          3.9         41           2
 P proline             6.9         73           3
 Q glutamine           5.4         57           2
 R arginine            6.6         70           3
 S serine             10.4        110           4
 T threonine           5.7         60           3
 V valine              4.5         48           2
 W tryptophan          1.0         11           1
 Y tyrosine            1.7         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM and calponin homology domains 1 isoform c [Homo... 
LIMCH1                0.998   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.991   LIM and calponin homology domains 1 isoform a [Homo...
LIMCH1                0.847   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.830   LIM and calponin homology domains 1 isoform e [Homo...
LMO7                  0.203   LIM domain only 7 isoform 1 
LMO7                  0.068   LIM domain only 7 isoform 2 
CNN1                  0.023   calponin 1, basic, smooth muscle 
CNN3                  0.023   calponin 3 
CNN2                  0.020   calponin 2 isoform b 
CNN2                  0.019   calponin 2 isoform a 
LOC283685             0.016   PREDICTED: golgi autoantigen, golgin subfamily a-li...
NEFH                  0.016   neurofilament, heavy polypeptide 200kDa 
CROCC                 0.015   ciliary rootlet coiled-coil 
MAP7                  0.015   microtubule-associated protein 7 
SCEL                  0.014   sciellin isoform 3 
SCEL                  0.014   sciellin isoform 1 
SCEL                  0.014   sciellin isoform 2 
NEFM                  0.014   neurofilament, medium polypeptide 150kDa isoform 1 ...
CALD1                 0.014   caldesmon 1 isoform 1 
MAP7D2                0.013   MAP7 domain containing 2 
LOC283685             0.013   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CDC2L2                0.011   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.011   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
WDR87                 0.011   NYD-SP11 protein 
TCHH                  0.011   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press