Guide to the Human Genome
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Name: WNT6 Sequence: fasta or formatted (365aa) NCBI GI: 16507239
Description:

wingless-type MMTV integration site family, member 6 precursor

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         37           2
 C cysteine            6.8         25           2
 D aspartate           3.8         14           2
 E glutamate           4.9         18           2
 F phenylalanine       3.3         12           1
 G glycine            10.4         38           2
 H histidine           3.0         11           1
 I isoleucine          1.4          5           1
 K lysine              2.5          9           1
 L leucine            11.5         42           7
 M methionine          1.4          5           1
 N asparagine          1.9          7           2
 P proline             7.1         26           2
 Q glutamine           3.8         14           2
 R arginine           11.2         41           2
 S serine              6.3         23           2
 T threonine           3.3         12           1
 V valine              4.9         18           2
 W tryptophan          1.9          7           2
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 6... 
WNT4                  0.371   wingless-type MMTV integration site family, member 4...
WNT2B                 0.365   wingless-type MMTV integration site family, member 2...
WNT1                  0.357   wingless-type MMTV integration site family, member 1 ...
WNT7B                 0.348   wingless-type MMTV integration site family, member 7...
WNT2B                 0.341   wingless-type MMTV integration site family, member 2...
WNT2                  0.337   wingless-type MMTV integration site family member 2 p...
WNT7A                 0.335   wingless-type MMTV integration site family, member 7...
WNT3A                 0.335   wingless-type MMTV integration site family, member 3...
WNT10B                0.335   wingless-type MMTV integration site family, member 1...
WNT3                  0.335   wingless-type MMTV integration site family, member 3...
WNT10A                0.333   wingless-type MMTV integration site family, member 1...
WNT5B                 0.332   wingless-type MMTV integration site family, member 5...
WNT5B                 0.332   wingless-type MMTV integration site family, member 5...
WNT5A                 0.332   wingless-type MMTV integration site family, member 5...
WNT16                 0.293   wingless-type MMTV integration site family, member 1...
WNT16                 0.289   wingless-type MMTV integration site family, member 1...
WNT11                 0.285   wingless-type MMTV integration site family, member 1...
WNT9A                 0.276   wingless-type MMTV integration site family, member 9...
WNT9B                 0.273   wingless-type MMTV integration site family, member 9...
WNT8B                 0.257   wingless-type MMTV integration site family, member ...
WNT8A                 0.256   wingless-type MMTV integration site family, member 8...
LOC100289775          0.161   PREDICTED: hypothetical protein XP_002348164 
COL9A3                0.027   alpha 3 type IX collagen 
LOC100293688          0.023   PREDICTED: similar to hCG2042405 
LOC100290987          0.023   PREDICTED: hypothetical protein XP_002347812 
LOC100288061          0.023   PREDICTED: hypothetical protein XP_002343602 
COL5A3                0.021   collagen, type V, alpha 3 preproprotein 
LOC100293055          0.020   PREDICTED: similar to COL22A1 protein 
COL22A1               0.020   collagen, type XXII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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