Guide to the Human Genome
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Name: WNT5B Sequence: fasta or formatted (359aa) NCBI GI: 17402919
Description:

wingless-type MMTV integration site family, member 5B precursor

Referenced in:

Wnt Signals

Other entries for this name:
alt mRNA [359aa] wingless-type MMTV integration site family, member 5B precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         28           3
 C cysteine            6.7         24           2
 D aspartate           3.9         14           1
 E glutamate           6.4         23           2
 F phenylalanine       3.6         13           1
 G glycine             8.1         29           2
 H histidine           1.7          6           1
 I isoleucine          2.2          8           2
 K lysine              5.6         20           2
 L leucine             8.4         30           4
 M methionine          2.5          9           1
 N asparagine          3.9         14           2
 P proline             3.3         12           1
 Q glutamine           5.3         19           1
 R arginine            8.1         29           2
 S serine              7.0         25           2
 T threonine           4.5         16           1
 V valine              6.1         22           2
 W tryptophan          2.2          8           2
 Y tyrosine            2.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 5... 
WNT5B                 1.000   wingless-type MMTV integration site family, member 5...
WNT5A                 0.825   wingless-type MMTV integration site family, member 5...
WNT2B                 0.456   wingless-type MMTV integration site family, member 2...
WNT2B                 0.454   wingless-type MMTV integration site family, member 2...
WNT7B                 0.442   wingless-type MMTV integration site family, member 7...
WNT2                  0.434   wingless-type MMTV integration site family member 2 p...
WNT3A                 0.427   wingless-type MMTV integration site family, member 3...
WNT4                  0.427   wingless-type MMTV integration site family, member 4...
WNT7A                 0.419   wingless-type MMTV integration site family, member 7...
WNT3                  0.415   wingless-type MMTV integration site family, member 3...
WNT16                 0.366   wingless-type MMTV integration site family, member 1...
WNT16                 0.362   wingless-type MMTV integration site family, member 1...
WNT1                  0.349   wingless-type MMTV integration site family, member 1 ...
WNT6                  0.340   wingless-type MMTV integration site family, member 6...
WNT11                 0.337   wingless-type MMTV integration site family, member 1...
WNT10A                0.329   wingless-type MMTV integration site family, member 1...
WNT8A                 0.302   wingless-type MMTV integration site family, member 8...
WNT8B                 0.300   wingless-type MMTV integration site family, member ...
WNT10B                0.295   wingless-type MMTV integration site family, member 1...
WNT9A                 0.258   wingless-type MMTV integration site family, member 9...
WNT9B                 0.250   wingless-type MMTV integration site family, member 9...
LOC100289775          0.199   PREDICTED: hypothetical protein XP_002348164 
ADAM12                0.007   ADAM metallopeptidase domain 12 isoform 2 preproprot...
ADAM12                0.007   ADAM metallopeptidase domain 12 isoform 1 preproprot...
AGPHD1                0.007   aminoglycoside phosphotransferase domain containing...
MUC2                  0.005   mucin 2 precursor 
LOC100293688          0.005   PREDICTED: similar to hCG2042405 
LOC100290987          0.005   PREDICTED: hypothetical protein XP_002347812 
LOC100288061          0.005   PREDICTED: hypothetical protein XP_002343602 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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