Guide to the Human Genome
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Name: WNT8A Sequence: fasta or formatted (351aa) NCBI GI: 17505195
Description:

wingless-type MMTV integration site family, member 8A

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         31           2
 C cysteine            7.1         25           2
 D aspartate           2.8         10           1
 E glutamate           7.1         25           2
 F phenylalanine       3.7         13           1
 G glycine             8.8         31           2
 H histidine           2.3          8           1
 I isoleucine          4.3         15           2
 K lysine              5.1         18           1
 L leucine             7.7         27           1
 M methionine          2.3          8           1
 N asparagine          5.4         19           2
 P proline             1.7          6           1
 Q glutamine           3.4         12           1
 R arginine            6.0         21           2
 S serine              9.4         33           2
 T threonine           5.1         18           2
 V valine              3.4         12           2
 W tryptophan          2.8         10           1
 Y tyrosine            2.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 8... 
WNT8B                 0.631   wingless-type MMTV integration site family, member ...
WNT2B                 0.308   wingless-type MMTV integration site family, member 2...
WNT2B                 0.308   wingless-type MMTV integration site family, member 2...
WNT5B                 0.307   wingless-type MMTV integration site family, member 5...
WNT5B                 0.307   wingless-type MMTV integration site family, member 5...
WNT1                  0.307   wingless-type MMTV integration site family, member 1 ...
WNT2                  0.304   wingless-type MMTV integration site family member 2 p...
WNT4                  0.303   wingless-type MMTV integration site family, member 4...
WNT5A                 0.300   wingless-type MMTV integration site family, member 5...
WNT3                  0.296   wingless-type MMTV integration site family, member 3...
WNT3A                 0.296   wingless-type MMTV integration site family, member 3...
WNT7B                 0.293   wingless-type MMTV integration site family, member 7...
WNT7A                 0.285   wingless-type MMTV integration site family, member 7...
WNT16                 0.276   wingless-type MMTV integration site family, member 1...
WNT16                 0.276   wingless-type MMTV integration site family, member 1...
WNT6                  0.267   wingless-type MMTV integration site family, member 6...
WNT11                 0.253   wingless-type MMTV integration site family, member 1...
WNT9B                 0.244   wingless-type MMTV integration site family, member 9...
WNT10A                0.242   wingless-type MMTV integration site family, member 1...
WNT10B                0.228   wingless-type MMTV integration site family, member 1...
WNT9A                 0.226   wingless-type MMTV integration site family, member 9...
LOC100289775          0.140   PREDICTED: hypothetical protein XP_002348164 
HMGXB3                0.010   HMG box domain containing 3 
C1orf56               0.007   hypothetical protein LOC54964 
ZNF131                0.006   zinc finger protein 131 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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