LIMCH1 6605

Name: LIMCH1	Sequence: fasta or formatted (1083aa)		NCBI GI: 163310741
Description: LIM and calponin homology domains 1 isoform a		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [1057aa] LIM and calponin homology domains 1 isoform b alt prot [1056aa] LIM and calponin homology domains 1 isoform c alt prot [902aa] LIM and calponin homology domains 1 isoform d alt prot [890aa] LIM and calponin homology domains 1 isoform e
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 53 2 C cysteine 1.7 18 1 D aspartate 5.9 64 2 E glutamate 9.8 106 4 F phenylalanine 2.7 29 1 G glycine 5.4 58 2 H histidine 1.8 19 1 I isoleucine 3.2 35 2 K lysine 8.0 87 3 L leucine 8.3 90 3 M methionine 1.7 18 1 N asparagine 3.9 42 2 P proline 7.4 80 3 Q glutamine 5.5 60 2 R arginine 6.6 72 3 S serine 10.5 114 4 T threonine 5.6 61 3 V valine 4.4 48 2 W tryptophan 1.0 11 1 Y tyrosine 1.7 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM and calponin homology domains 1 isoform a [Homo... LIMCH1 0.967 LIM and calponin homology domains 1 isoform b [Homo... LIMCH1 0.963 LIM and calponin homology domains 1 isoform c [Homo... LIMCH1 0.815 LIM and calponin homology domains 1 isoform d [Homo... LIMCH1 0.799 LIM and calponin homology domains 1 isoform e [Homo... LMO7 0.193 LIM domain only 7 isoform 1 LMO7 0.062 LIM domain only 7 isoform 2 CNN1 0.022 calponin 1, basic, smooth muscle CNN3 0.022 calponin 3 CNN2 0.020 calponin 2 isoform b CNN2 0.019 calponin 2 isoform a LOC283685 0.017 PREDICTED: golgi autoantigen, golgin subfamily a-li... CROCC 0.016 ciliary rootlet coiled-coil NEFH 0.014 neurofilament, heavy polypeptide 200kDa SCEL 0.014 sciellin isoform 3 SCEL 0.014 sciellin isoform 1 SCEL 0.014 sciellin isoform 2 CALD1 0.014 caldesmon 1 isoform 1 LOC283685 0.014 PREDICTED: golgi autoantigen, golgin subfamily a-li... NEFM 0.014 neurofilament, medium polypeptide 150kDa isoform 1 ... MAP7D2 0.013 MAP7 domain containing 2 TCHH 0.012 trichohyalin LHX6 0.011 LIM homeobox protein 6 isoform 2 LHX6 0.011 LIM homeobox protein 6 isoform 1 CDC2L2 0.011 cell division cycle 2-like 2 isoform 4 CDC2L2 0.011 cell division cycle 2-like 2 isoform 1 NEFM 0.011 neurofilament, medium polypeptide 150kDa isoform 2 ... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.011 cell division cycle 2-like 1 (PITSLRE proteins) isof... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.