LIMCH1 6609

Name: LIMCH1	Sequence: fasta or formatted (890aa)		NCBI GI: 163310749
Description: LIM and calponin homology domains 1 isoform e		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [1083aa] LIM and calponin homology domains 1 isoform a alt prot [1057aa] LIM and calponin homology domains 1 isoform b alt prot [1056aa] LIM and calponin homology domains 1 isoform c alt prot [902aa] LIM and calponin homology domains 1 isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.6 41 2 C cysteine 1.5 13 1 D aspartate 6.3 56 2 E glutamate 10.6 94 4 F phenylalanine 2.4 21 1 G glycine 4.8 43 2 H histidine 2.0 18 1 I isoleucine 3.0 27 2 K lysine 8.3 74 3 L leucine 7.2 64 3 M methionine 1.9 17 1 N asparagine 3.7 33 2 P proline 6.7 60 3 Q glutamine 5.7 51 2 R arginine 7.1 63 3 S serine 11.2 100 4 T threonine 5.6 50 3 V valine 4.7 42 2 W tryptophan 1.0 9 1 Y tyrosine 1.6 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM and calponin homology domains 1 isoform e [Homo... LIMCH1 0.995 LIM and calponin homology domains 1 isoform d [Homo... LIMCH1 0.988 LIM and calponin homology domains 1 isoform c [Homo... LIMCH1 0.985 LIM and calponin homology domains 1 isoform b [Homo... LIMCH1 0.977 LIM and calponin homology domains 1 isoform a [Homo... LMO7 0.150 LIM domain only 7 isoform 1 LMO7 0.081 LIM domain only 7 isoform 2 CROCC 0.019 ciliary rootlet coiled-coil LOC283685 0.019 PREDICTED: golgi autoantigen, golgin subfamily a-li... NEFH 0.019 neurofilament, heavy polypeptide 200kDa MAP7 0.018 microtubule-associated protein 7 SCEL 0.017 sciellin isoform 3 SCEL 0.017 sciellin isoform 1 SCEL 0.017 sciellin isoform 2 NEFM 0.016 neurofilament, medium polypeptide 150kDa isoform 1 ... CALD1 0.016 caldesmon 1 isoform 1 MAP7D2 0.016 MAP7 domain containing 2 LOC283685 0.015 PREDICTED: golgi autoantigen, golgin subfamily a-li... CDC2L2 0.014 cell division cycle 2-like 2 isoform 4 CDC2L2 0.014 cell division cycle 2-like 2 isoform 1 CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... WDR87 0.014 NYD-SP11 protein MAP1B 0.014 microtubule-associated protein 1B CALD1 0.014 caldesmon 1 isoform 3 LOC727832 0.013 golgi autoantigen, golgin subfamily a-like LOC400352 0.013 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.013 PREDICTED: similar to Putative golgin subfamily A m... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.