Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WNT3A Sequence: fasta or formatted (352aa) NCBI GI: 14916475
Description:

wingless-type MMTV integration site family, member 3A

Referenced in:

Stem Cells and Early Development
Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         28           2
 C cysteine            7.1         25           2
 D aspartate           4.0         14           1
 E glutamate           6.2         22           1
 F phenylalanine       4.0         14           1
 G glycine             8.5         30           2
 H histidine           3.7         13           1
 I isoleucine          4.0         14           1
 K lysine              4.3         15           1
 L leucine             5.7         20           3
 M methionine          1.7          6           1
 N asparagine          2.8         10           2
 P proline             4.5         16           1
 Q glutamine           3.1         11           1
 R arginine            8.2         29           3
 S serine              8.5         30           2
 T threonine           4.0         14           2
 V valine              6.0         21           2
 W tryptophan          2.6          9           2
 Y tyrosine            3.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 3... 
WNT3                  0.863   wingless-type MMTV integration site family, member 3...
WNT4                  0.438   wingless-type MMTV integration site family, member 4...
WNT5B                 0.426   wingless-type MMTV integration site family, member 5...
WNT5B                 0.426   wingless-type MMTV integration site family, member 5...
WNT5A                 0.403   wingless-type MMTV integration site family, member 5...
WNT2                  0.403   wingless-type MMTV integration site family member 2 p...
WNT1                  0.400   wingless-type MMTV integration site family, member 1 ...
WNT7B                 0.399   wingless-type MMTV integration site family, member 7...
WNT7A                 0.392   wingless-type MMTV integration site family, member 7...
WNT2B                 0.388   wingless-type MMTV integration site family, member 2...
WNT2B                 0.385   wingless-type MMTV integration site family, member 2...
WNT16                 0.361   wingless-type MMTV integration site family, member 1...
WNT16                 0.359   wingless-type MMTV integration site family, member 1...
WNT10A                0.348   wingless-type MMTV integration site family, member 1...
WNT6                  0.341   wingless-type MMTV integration site family, member 6...
WNT10B                0.336   wingless-type MMTV integration site family, member 1...
WNT11                 0.322   wingless-type MMTV integration site family, member 1...
WNT8A                 0.290   wingless-type MMTV integration site family, member 8...
WNT8B                 0.283   wingless-type MMTV integration site family, member ...
WNT9A                 0.241   wingless-type MMTV integration site family, member 9...
WNT9B                 0.238   wingless-type MMTV integration site family, member 9...
LOC100289775          0.180   PREDICTED: hypothetical protein XP_002348164 
LOC730060             0.011   PREDICTED: hypothetical protein 
LOC730060             0.011   PREDICTED: hypothetical protein 
LOC730060             0.011   PREDICTED: hypothetical protein 
B4GALT1               0.010   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1...
ADAM12                0.008   ADAM metallopeptidase domain 12 isoform 2 preproprot...
ADAM12                0.008   ADAM metallopeptidase domain 12 isoform 1 preproprot...
LOC100293012          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press