Guide to the Human Genome
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Name: WNT5A Sequence: fasta or formatted (380aa) NCBI GI: 40806205
Description:

wingless-type MMTV integration site family, member 5A precursor

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         30           3
 C cysteine            6.3         24           2
 D aspartate           4.5         17           1
 E glutamate           4.7         18           1
 F phenylalanine       3.9         15           2
 G glycine             8.7         33           2
 H histidine           2.1          8           1
 I isoleucine          3.7         14           2
 K lysine              6.1         23           2
 L leucine             6.8         26           1
 M methionine          3.2         12           1
 N asparagine          4.2         16           2
 P proline             2.1          8           1
 Q glutamine           4.7         18           1
 R arginine            6.6         25           2
 S serine              8.2         31           2
 T threonine           4.2         16           2
 V valine              6.6         25           2
 W tryptophan          1.8          7           2
 Y tyrosine            3.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   wingless-type MMTV integration site family, member 5... 
WNT5B                 0.783   wingless-type MMTV integration site family, member 5...
WNT5B                 0.783   wingless-type MMTV integration site family, member 5...
WNT2B                 0.440   wingless-type MMTV integration site family, member 2...
WNT2B                 0.431   wingless-type MMTV integration site family, member 2...
WNT4                  0.422   wingless-type MMTV integration site family, member 4...
WNT2                  0.419   wingless-type MMTV integration site family member 2 p...
WNT7B                 0.411   wingless-type MMTV integration site family, member 7...
WNT7A                 0.393   wingless-type MMTV integration site family, member 7...
WNT3                  0.384   wingless-type MMTV integration site family, member 3...
WNT3A                 0.383   wingless-type MMTV integration site family, member 3...
WNT1                  0.343   wingless-type MMTV integration site family, member 1 ...
WNT16                 0.331   wingless-type MMTV integration site family, member 1...
WNT16                 0.331   wingless-type MMTV integration site family, member 1...
WNT6                  0.322   wingless-type MMTV integration site family, member 6...
WNT11                 0.318   wingless-type MMTV integration site family, member 1...
WNT10A                0.305   wingless-type MMTV integration site family, member 1...
WNT8B                 0.287   wingless-type MMTV integration site family, member ...
WNT10B                0.282   wingless-type MMTV integration site family, member 1...
WNT8A                 0.279   wingless-type MMTV integration site family, member 8...
WNT9A                 0.255   wingless-type MMTV integration site family, member 9...
WNT9B                 0.251   wingless-type MMTV integration site family, member 9...
LOC100289775          0.189   PREDICTED: hypothetical protein XP_002348164 
LOC100293688          0.017   PREDICTED: similar to hCG2042405 
LOC100290987          0.017   PREDICTED: hypothetical protein XP_002347812 
LOC100288061          0.017   PREDICTED: hypothetical protein XP_002343602 
ZNF292                0.008   zinc finger protein 292 
ADAM23                0.006   ADAM metallopeptidase domain 23 preproprotein 
MUC2                  0.006   mucin 2 precursor 
FGD1                  0.006   faciogenital dysplasia protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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