Guide to the Human Genome
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Name: LOC100290987 Sequence: fasta or formatted (137aa) NCBI GI: 239751341
Description:

PREDICTED: hypothetical protein XP_002347812

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         10           2
 C cysteine            2.2          3           1
 D aspartate           1.5          2           1
 E glutamate           6.6          9           2
 F phenylalanine       4.4          6           1
 G glycine             8.0         11           1
 H histidine           2.2          3           1
 I isoleucine          0.7          1           1
 K lysine              4.4          6           2
 L leucine            17.5         24           2
 M methionine          3.6          5           1
 N asparagine          2.9          4           1
 P proline             7.3         10           1
 Q glutamine           8.0         11           2
 R arginine            5.8          8           1
 S serine              7.3         10           3
 T threonine           2.2          3           1
 V valine              2.9          4           1
 W tryptophan          3.6          5           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347812 
LOC100288061          1.000   PREDICTED: hypothetical protein XP_002343602 
LOC100293688          0.931   PREDICTED: similar to hCG2042405 
WNT9B                 0.401   wingless-type MMTV integration site family, member 9...
WNT9A                 0.183   wingless-type MMTV integration site family, member 9...
WNT16                 0.099   wingless-type MMTV integration site family, member 1...
WNT16                 0.099   wingless-type MMTV integration site family, member 1...
WNT6                  0.065   wingless-type MMTV integration site family, member 6...
WNT10A                0.057   wingless-type MMTV integration site family, member 1...
WNT10B                0.053   wingless-type MMTV integration site family, member 1...
WNT7A                 0.050   wingless-type MMTV integration site family, member 7...
WNT2B                 0.050   wingless-type MMTV integration site family, member 2...
WNT2B                 0.050   wingless-type MMTV integration site family, member 2...
WNT5A                 0.050   wingless-type MMTV integration site family, member 5...
WNT4                  0.046   wingless-type MMTV integration site family, member 4...
LOC100289775          0.042   PREDICTED: hypothetical protein XP_002348164 
WNT7B                 0.042   wingless-type MMTV integration site family, member 7...
WNT2                  0.038   wingless-type MMTV integration site family member 2 p...
WNT1                  0.031   wingless-type MMTV integration site family, member 1 ...
AKNA                  0.019   AT-hook transcription factor 
WNT5B                 0.015   wingless-type MMTV integration site family, member 5...
WNT5B                 0.015   wingless-type MMTV integration site family, member 5...
ACRBP                 0.011   proacrosin binding protein sp32 precursor 
WNT3                  0.011   wingless-type MMTV integration site family, member 3...
WNT3A                 0.011   wingless-type MMTV integration site family, member 3...
CLEC18A               0.011   secretory protein LOC348174 
CLEC18A               0.011   secretory protein LOC348174 
RNF186                0.011   ring finger protein 186 
LOC100292629          0.008   PREDICTED: hypothetical protein 
LOC100289960          0.008   PREDICTED: hypothetical protein XP_002346853 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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