Guide to the Human Genome
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Name: LRIG1 Sequence: fasta or formatted (1093aa) NCBI GI: 54607118
Description:

leucine-rich repeats and immunoglobulin-like domains 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         81           3
 C cysteine            2.7         29           1
 D aspartate           4.7         51           3
 E glutamate           5.5         60           2
 F phenylalanine       3.0         33           2
 G glycine             7.0         76           2
 H histidine           3.7         40           2
 I isoleucine          3.5         38           2
 K lysine              4.2         46           3
 L leucine            11.9        130           4
 M methionine          1.6         17           1
 N asparagine          4.5         49           3
 P proline             6.2         68           3
 Q glutamine           3.7         40           1
 R arginine            5.3         58           2
 S serine              9.6        105           5
 T threonine           6.7         73           3
 V valine              6.3         69           2
 W tryptophan          1.1         12           1
 Y tyrosine            1.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeats and immunoglobulin-like domains... 
LRIG3                 0.441   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.423   leucine-rich repeats and immunoglobulin-like domain...
LRIG2                 0.401   leucine-rich repeats and immunoglobulin-like domains ...
PXDN                  0.092   peroxidasin 
PXDNL                 0.089   peroxidasin homolog-like 
IGFALS                0.073   insulin-like growth factor binding protein, acid la...
IGFALS                0.072   insulin-like growth factor binding protein, acid labi...
SLIT1                 0.067   slit homolog 1 
LGR6                  0.064   leucine-rich repeat-containing G protein-coupled rec...
LRRC15                0.063   leucine rich repeat containing 15 isoform a 
LRRC15                0.063   leucine rich repeat containing 15 isoform b 
LGR4                  0.062   leucine-rich repeat-containing G protein-coupled re...
CPN2                  0.060   carboxypeptidase N, polypeptide 2, 83kD 
SLIT2                 0.059   slit homolog 2 
LINGO3                0.056   leucine rich repeat and Ig domain containing 3 [Hom...
LGR5                  0.056   leucine-rich repeat-containing G protein-coupled rece...
LRRC4C                0.054   netrin-G1 ligand 
ROBO1                 0.053   roundabout 1 isoform b 
ROBO1                 0.053   roundabout 1 isoform a 
LRRC70                0.053   synleurin 
LRRC4                 0.051   leucine rich repeat containing 4 
ROBO1                 0.051   roundabout 1 isoform d 
ROBO1                 0.051   roundabout 1 isoform c 
LOC642132             0.051   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.051   PREDICTED: similar to roundabout 1 isoform 2 
HMCN1                 0.051   hemicentin 1 
KIAA0644              0.051   hypothetical protein LOC9865 
LINGO1                0.051   leucine-rich repeat neuronal 6A 
LINGO2                0.050   leucine rich repeat and Ig domain containing 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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