Guide to the Human Genome
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Name: HMCN2 Sequence: fasta or formatted (3783aa) NCBI GI: 169177000
Description:

PREDICTED: hemicentin 2

Referenced in:

Epidermal Growth Factor
Extracellular Matrix
Additional Genes in Development

Other entries for this name:
alt prot [3874aa] PREDICTED: hemicentin 2
alt prot [5065aa] PREDICTED: hemicentin 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        334           3
 C cysteine            3.0        113           1
 D aspartate           4.4        167           2
 E glutamate           6.3        237           3
 F phenylalanine       1.9         73           2
 G glycine             9.1        344           2
 H histidine           2.5         95           2
 I isoleucine          2.5         95           1
 K lysine              2.1         80           2
 L leucine            10.3        390           4
 M methionine          0.9         34           2
 N asparagine          3.0        114           2
 P proline             8.3        314           3
 Q glutamine           5.4        203           2
 R arginine            5.8        221           3
 S serine              6.9        262           2
 T threonine           5.6        210           2
 V valine              9.6        362           4
 W tryptophan          1.6         61           2
 X unknown             0.0          1           1
 Y tyrosine            1.9         73           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hemicentin 2 
HMCN2                 0.995   PREDICTED: hemicentin 2 
HMCN2                 0.987   PREDICTED: hemicentin 2 
HMCN1                 0.310   hemicentin 1 
TTN                   0.108   titin isoform N2-A 
OBSCN                 0.068   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.068   obscurin, cytoskeletal calmodulin and titin-interac...
HSPG2                 0.064   heparan sulfate proteoglycan 2 
LOC100292387          0.039   PREDICTED: similar to hemicentin 2 
OBSL1                 0.038   obscurin-like 1 
MXRA5                 0.037   adlican 
IGSF10                0.036   immunoglobulin superfamily, member 10 
TTN                   0.028   titin isoform novex-1 
TTN                   0.027   titin isoform N2-B 
DSCAML1               0.026   Down syndrome cell adhesion molecule like 1 
LTBP4                 0.025   latent transforming growth factor beta binding prot...
LTBP4                 0.025   latent transforming growth factor beta binding prot...
LTBP4                 0.025   latent transforming growth factor beta binding prot...
TTN                   0.025   titin isoform novex-2 
DSCAM                 0.025   Down syndrome cell adhesion molecule isoform CHD2-42...
ROBO3                 0.025   roundabout, axon guidance receptor, homolog 3 
FBLN1                 0.024   fibulin 1 isoform C precursor 
ROBO1                 0.024   roundabout 1 isoform b 
ROBO1                 0.024   roundabout 1 isoform a 
FBLN1                 0.024   fibulin 1 isoform B precursor 
SIGLEC1               0.023   sialoadhesin precursor 
ROBO1                 0.023   roundabout 1 isoform d 
ROBO1                 0.023   roundabout 1 isoform c 
LOC642132             0.023   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.023   PREDICTED: similar to roundabout 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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