Guide to the Human Genome
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Name: LRIG3 Sequence: fasta or formatted (1059aa) NCBI GI: 209862903
Description:

leucine-rich repeats and immunoglobulin-like domains 3 isoform 1

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [1119aa] leucine-rich repeats and immunoglobulin-like domains 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         65           2
 C cysteine            2.5         26           2
 D aspartate           5.9         63           3
 E glutamate           5.3         56           2
 F phenylalanine       4.4         47           2
 G glycine             5.7         60           2
 H histidine           2.9         31           2
 I isoleucine          4.5         48           2
 K lysine              4.5         48           3
 L leucine            11.9        126           3
 M methionine          2.4         25           1
 N asparagine          6.0         64           3
 P proline             5.0         53           3
 Q glutamine           3.9         41           2
 R arginine            4.1         43           3
 S serine             10.5        111           3
 T threonine           5.9         63           2
 V valine              4.9         52           2
 W tryptophan          1.1         12           1
 Y tyrosine            2.4         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeats and immunoglobulin-like domain... 
LRIG3                 0.983   leucine-rich repeats and immunoglobulin-like domains...
LRIG2                 0.514   leucine-rich repeats and immunoglobulin-like domains ...
LRIG1                 0.437   leucine-rich repeats and immunoglobulin-like domains...
PXDN                  0.093   peroxidasin 
PXDNL                 0.088   peroxidasin homolog-like 
LRRC15                0.063   leucine rich repeat containing 15 isoform a 
LRRC15                0.063   leucine rich repeat containing 15 isoform b 
LINGO4                0.061   leucine rich repeat and Ig domain containing 4 [Homo...
LINGO2                0.060   leucine rich repeat and Ig domain containing 2 [Homo...
LINGO3                0.059   leucine rich repeat and Ig domain containing 3 [Hom...
LRRC70                0.058   synleurin 
LINGO1                0.057   leucine-rich repeat neuronal 6A 
IGFALS                0.055   insulin-like growth factor binding protein, acid la...
IGFALS                0.055   insulin-like growth factor binding protein, acid labi...
CPN2                  0.052   carboxypeptidase N, polypeptide 2, 83kD 
LRRC4B                0.051   leucine rich repeat containing 4B 
KIAA0644              0.050   hypothetical protein LOC9865 
LRRC4C                0.048   netrin-G1 ligand 
LGR6                  0.047   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.047   leucine-rich repeat-containing G protein-coupled rec...
ROBO1                 0.047   roundabout 1 isoform b 
ROBO1                 0.047   roundabout 1 isoform a 
GP5                   0.047   glycoprotein V (platelet) 
HMCN1                 0.046   hemicentin 1 
LRRC4                 0.045   leucine rich repeat containing 4 
HMCN2                 0.045   PREDICTED: hemicentin 2 
LGR4                  0.045   leucine-rich repeat-containing G protein-coupled re...
HMCN2                 0.045   PREDICTED: hemicentin 2 
HMCN2                 0.045   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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