Guide to the Human Genome
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Name: MDGA2 Sequence: fasta or formatted (956aa) NCBI GI: 164698517
Description:

MAM domain containing 1 isoform 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [727aa] MAM domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         47           1
 C cysteine            2.0         19           1
 D aspartate           4.6         44           2
 E glutamate           6.2         59           3
 F phenylalanine       3.2         31           2
 G glycine             7.4         71           3
 H histidine           1.3         12           1
 I isoleucine          7.3         70           2
 K lysine              4.5         43           2
 L leucine             7.4         71           2
 M methionine          1.3         12           1
 N asparagine          5.3         51           3
 P proline             5.9         56           2
 Q glutamine           4.3         41           2
 R arginine            6.2         59           2
 S serine              7.2         69           3
 T threonine           7.2         69           2
 V valine              7.3         70           2
 W tryptophan          1.7         16           2
 Y tyrosine            4.8         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAM domain containing 1 isoform 1 
MDGA2                 0.758   MAM domain containing 1 isoform 2 
MDGA1                 0.526   MAM domain containing glycosylphosphatidylinositol a...
CNTN4                 0.064   contactin 4 isoform a precursor 
HSPG2                 0.060   heparan sulfate proteoglycan 2 
CNTN5                 0.057   contactin 5 isoform long 
CNTN5                 0.057   contactin 5 isoform short 
HMCN1                 0.054   hemicentin 1 
HMCN2                 0.052   PREDICTED: hemicentin 2 
HMCN2                 0.052   PREDICTED: hemicentin 2 
HMCN2                 0.052   PREDICTED: hemicentin 2 
TTN                   0.051   titin isoform N2-A 
CNTN3                 0.051   contactin 3 
LOC100292387          0.050   PREDICTED: similar to hemicentin 2 
C10orf112             0.047   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.047   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.047   PREDICTED: chromosome 10 open reading frame 112 [Ho...
CNTN2                 0.046   contactin 2 precursor 
MXRA5                 0.046   adlican 
DSCAML1               0.046   Down syndrome cell adhesion molecule like 1 
NRCAM                 0.045   neuronal cell adhesion molecule isoform A precursor ...
DSCAM                 0.044   Down syndrome cell adhesion molecule isoform CHD2-42...
NRCAM                 0.044   neuronal cell adhesion molecule isoform B precursor ...
IGSF10                0.044   immunoglobulin superfamily, member 10 
CNTN1                 0.043   contactin 1 isoform 1 precursor 
CNTN1                 0.043   contactin 1 isoform 2 precursor 
MAMDC2                0.041   MAM domain containing 2 
CNTN6                 0.041   contactin 6 
NFASC                 0.039   neurofascin isoform 6 precursor 
NFASC                 0.039   neurofascin isoform 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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