Guide to the Human Genome
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Name: CNTN2 Sequence: fasta or formatted (1040aa) NCBI GI: 4827022
Description:

contactin 2 precursor

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         92           3
 C cysteine            1.2         12           1
 D aspartate           4.1         43           2
 E glutamate           5.6         58           3
 F phenylalanine       3.1         32           1
 G glycine             8.4         87           4
 H histidine           2.0         21           1
 I isoleucine          4.5         47           2
 K lysine              3.8         39           1
 L leucine             7.9         82           3
 M methionine          1.9         20           2
 N asparagine          4.4         46           1
 P proline             7.5         78           3
 Q glutamine           3.4         35           2
 R arginine            6.2         65           2
 S serine              7.9         82           4
 T threonine           7.4         77           2
 V valine              7.1         74           3
 W tryptophan          2.1         22           1
 Y tyrosine            2.7         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   contactin 2 precursor 
CNTN1                 0.459   contactin 1 isoform 1 precursor 
CNTN1                 0.459   contactin 1 isoform 2 precursor 
CNTN5                 0.418   contactin 5 isoform short 
CNTN3                 0.418   contactin 3 
CNTN5                 0.417   contactin 5 isoform long 
CNTN4                 0.417   contactin 4 isoform a precursor 
CNTN6                 0.398   contactin 6 
CNTN4                 0.300   contactin 4 isoform c precursor 
CHL1                  0.177   cell adhesion molecule with homology to L1CAM precur...
L1CAM                 0.173   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.173   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.173   L1 cell adhesion molecule isoform 1 precursor 
NRCAM                 0.168   neuronal cell adhesion molecule isoform B precursor ...
NRCAM                 0.166   neuronal cell adhesion molecule isoform A precursor ...
NFASC                 0.163   neurofascin isoform 3 precursor 
NFASC                 0.163   neurofascin isoform 4 precursor 
NFASC                 0.159   neurofascin isoform 2 precursor 
NFASC                 0.154   neurofascin isoform 1 precursor 
SDK1                  0.129   sidekick 1 
SDK2                  0.123   sidekick 2 
DSCAM                 0.098   Down syndrome cell adhesion molecule isoform CHD2-42...
NFASC                 0.096   neurofascin isoform 6 precursor 
NFASC                 0.096   neurofascin isoform 5 precursor 
DSCAML1               0.091   Down syndrome cell adhesion molecule like 1 
CNTN4                 0.089   contactin 4 isoform b precursor 
ROBO2                 0.085   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.085   roundabout, axon guidance receptor, homolog 2 isofor...
PTPRD                 0.085   protein tyrosine phosphatase, receptor type, D isofo...
NEO1                  0.083   neogenin homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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