Guide to the Human Genome
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Name: LOC100289200 Sequence: fasta or formatted (790aa) NCBI GI: 239743951
Description:

PREDICTED: hypothetical protein XP_002342997

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         71           2
 C cysteine            1.3         10           1
 D aspartate           4.2         33           1
 E glutamate           6.6         52           3
 F phenylalanine       2.2         17           1
 G glycine             8.7         69           3
 H histidine           2.7         21           1
 I isoleucine          4.1         32           2
 K lysine              2.9         23           2
 L leucine             9.9         78           2
 M methionine          0.9          7           1
 N asparagine          2.3         18           1
 P proline             7.2         57           3
 Q glutamine           4.4         35           2
 R arginine            5.3         42           2
 S serine              8.9         70           3
 T threonine           5.6         44           2
 V valine              9.9         78           2
 W tryptophan          1.6         13           1
 Y tyrosine            2.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342997 
HMCN2                 0.987   PREDICTED: hemicentin 2 
LOC100292387          0.839   PREDICTED: similar to hemicentin 2 
HMCN1                 0.486   hemicentin 1 
HSPG2                 0.076   heparan sulfate proteoglycan 2 
HMCN2                 0.074   PREDICTED: hemicentin 2 
HMCN2                 0.074   PREDICTED: hemicentin 2 
PXDN                  0.073   peroxidasin 
TTN                   0.069   titin isoform N2-A 
MXRA5                 0.066   adlican 
ROBO3                 0.066   roundabout, axon guidance receptor, homolog 3 
ROBO2                 0.066   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.066   roundabout, axon guidance receptor, homolog 2 isofor...
DSCAM                 0.064   Down syndrome cell adhesion molecule isoform CHD2-42...
IGSF10                0.064   immunoglobulin superfamily, member 10 
PXDNL                 0.064   peroxidasin homolog-like 
ROBO1                 0.063   roundabout 1 isoform b 
ROBO1                 0.063   roundabout 1 isoform a 
SDK2                  0.062   sidekick 2 
C6orf27               0.062   G7c protein 
ROBO1                 0.059   roundabout 1 isoform d 
ROBO1                 0.059   roundabout 1 isoform c 
LOC642132             0.059   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.059   PREDICTED: similar to roundabout 1 isoform 2 
NCAM2                 0.059   neural cell adhesion molecule 2 precursor 
CNTN3                 0.058   contactin 3 
DSCAML1               0.058   Down syndrome cell adhesion molecule like 1 
CNTN6                 0.057   contactin 6 
CNTN2                 0.057   contactin 2 precursor 
L1CAM                 0.057   L1 cell adhesion molecule isoform 3 precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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