Guide to the Human Genome
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Name: LRP4 Sequence: fasta or formatted (1905aa) NCBI GI: 157384998
Description:

low density lipoprotein receptor-related protein 4

Referenced in:

Epidermal Growth Factor
Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        112           2
 C cysteine            4.9         94           1
 D aspartate           9.0        172           3
 E glutamate           5.2        100           2
 F phenylalanine       2.0         39           1
 G glycine             8.1        154           2
 H histidine           2.8         54           2
 I isoleucine          4.9         94           2
 K lysine              3.3         62           2
 L leucine             8.4        160           3
 M methionine          1.7         33           1
 N asparagine          5.0         95           3
 P proline             4.6         87           2
 Q glutamine           3.2         61           2
 R arginine            6.7        127           3
 S serine              7.7        146           2
 T threonine           6.1        117           2
 V valine              5.1         98           3
 W tryptophan          2.7         52           1
 Y tyrosine            2.5         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 4 ... 
LRP1                  0.273   low density lipoprotein-related protein 1 
LRP6                  0.267   low density lipoprotein receptor-related protein 6 ...
LRP1B                 0.262   low density lipoprotein-related protein 1B precursor...
LRP2                  0.259   low density lipoprotein-related protein 2 
LRP5                  0.249   low density lipoprotein receptor-related protein 5 ...
VLDLR                 0.144   very low density lipoprotein receptor isoform a [Hom...
VLDLR                 0.143   very low density lipoprotein receptor isoform b [Hom...
LDLR                  0.132   low density lipoprotein receptor precursor 
LRP8                  0.131   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.131   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.107   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.096   low density lipoprotein receptor-related protein 8 i...
EGF                   0.067   epidermal growth factor (beta-urogastrone) 
SORL1                 0.062   sortilin-related receptor containing LDLR class A rep...
SSPO                  0.045   SCO-spondin 
LRP5L                 0.044   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.044   low density lipoprotein receptor-related protein 5-...
NID1                  0.044   nidogen 1 precursor 
CORIN                 0.038   corin 
NID2                  0.037   nidogen 2 precursor 
HSPG2                 0.029   heparan sulfate proteoglycan 2 
ST14                  0.028   matriptase 
FBN2                  0.023   fibrillin 2 precursor 
LDLRAD3               0.022   low density lipoprotein receptor class A domain cont...
FBN1                  0.021   fibrillin 1 precursor 
FBN3                  0.021   fibrillin 3 precursor 
LRP12                 0.021   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.021   low density lipoprotein-related protein 12 isoform a ...
LTBP1                 0.020   latent transforming growth factor beta binding prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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