Guide to the Human Genome
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Name: LRP12 Sequence: fasta or formatted (859aa) NCBI GI: 7305525
Description:

low density lipoprotein-related protein 12 isoform a precursor

Referenced in:

Lipoproteins

Other entries for this name:
alt prot [840aa] low density lipoprotein-related protein 12 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         52           3
 C cysteine            5.7         49           1
 D aspartate           6.9         59           4
 E glutamate           5.8         50           2
 F phenylalanine       4.0         34           2
 G glycine             7.5         64           2
 H histidine           2.0         17           1
 I isoleucine          4.5         39           2
 K lysine              2.6         22           1
 L leucine             7.2         62           4
 M methionine          0.9          8           1
 N asparagine          5.5         47           2
 P proline             6.5         56           3
 Q glutamine           4.0         34           2
 R arginine            6.6         57           2
 S serine              9.3         80           3
 T threonine           5.4         46           2
 V valine              5.2         45           2
 W tryptophan          1.7         15           1
 Y tyrosine            2.7         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein-related protein 12 isoform a ... 
LRP12                 0.973   low density lipoprotein-related protein 12 isoform ...
LRP3                  0.323   low density lipoprotein receptor-related protein 3 ...
LRP10                 0.197   low density lipoprotein receptor-related protein 10 ...
ST14                  0.062   matriptase 
LRP1B                 0.061   low density lipoprotein-related protein 1B precursor...
LRP2                  0.056   low density lipoprotein-related protein 2 
SORL1                 0.055   sortilin-related receptor containing LDLR class A rep...
LRP1                  0.053   low density lipoprotein-related protein 1 
CSMD3                 0.052   CUB and Sushi multiple domains 3 isoform 3 
TLL2                  0.051   tolloid-like 2 
MFRP                  0.051   membrane frizzled-related protein 
TLL1                  0.050   tolloid-like 1 
LRP4                  0.048   low density lipoprotein receptor-related protein 4 ...
CSMD1                 0.048   CUB and Sushi multiple domains 1 
BMP1                  0.046   bone morphogenetic protein 1 isoform 3 precursor [Hom...
CSMD2                 0.043   CUB and Sushi multiple domains 2 
CUBN                  0.042   cubilin 
CSMD3                 0.038   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.038   CUB and Sushi multiple domains 3 isoform 1 
CDCP2                 0.037   CUB domain containing protein 2 
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
LOC100291777          0.037   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.037   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.037   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.037   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.037   deleted in malignant brain tumors 1 isoform a precu...
LRP6                  0.037   low density lipoprotein receptor-related protein 6 ...
VLDLR                 0.036   very low density lipoprotein receptor isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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