Guide to the Human Genome
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Name: LRP12 Sequence: fasta or formatted (840aa) NCBI GI: 208973262
Description:

low density lipoprotein-related protein 12 isoform b precursor

Referenced in:

Lipoproteins

Other entries for this name:
alt prot [859aa] low density lipoprotein-related protein 12 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         50           3
 C cysteine            5.8         49           1
 D aspartate           7.0         59           4
 E glutamate           5.7         48           2
 F phenylalanine       4.0         34           2
 G glycine             7.3         61           2
 H histidine           1.8         15           1
 I isoleucine          4.5         38           2
 K lysine              2.6         22           1
 L leucine             7.3         61           4
 M methionine          1.0          8           1
 N asparagine          5.4         45           2
 P proline             6.7         56           3
 Q glutamine           4.0         34           2
 R arginine            6.8         57           2
 S serine              9.2         77           3
 T threonine           5.4         45           2
 V valine              5.1         43           2
 W tryptophan          1.8         15           1
 Y tyrosine            2.7         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein-related protein 12 isoform ... 
LRP12                 0.994   low density lipoprotein-related protein 12 isoform a ...
LRP3                  0.330   low density lipoprotein receptor-related protein 3 ...
LRP10                 0.201   low density lipoprotein receptor-related protein 10 ...
ST14                  0.064   matriptase 
LRP1B                 0.062   low density lipoprotein-related protein 1B precursor...
LRP2                  0.057   low density lipoprotein-related protein 2 
SORL1                 0.056   sortilin-related receptor containing LDLR class A rep...
LRP1                  0.055   low density lipoprotein-related protein 1 
CSMD3                 0.052   CUB and Sushi multiple domains 3 isoform 3 
TLL2                  0.052   tolloid-like 2 
MFRP                  0.052   membrane frizzled-related protein 
TLL1                  0.051   tolloid-like 1 
LRP4                  0.049   low density lipoprotein receptor-related protein 4 ...
CSMD1                 0.049   CUB and Sushi multiple domains 1 
BMP1                  0.047   bone morphogenetic protein 1 isoform 3 precursor [Hom...
CSMD2                 0.044   CUB and Sushi multiple domains 2 
CUBN                  0.040   cubilin 
CSMD3                 0.039   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.039   CUB and Sushi multiple domains 3 isoform 1 
LRP8                  0.038   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.038   low density lipoprotein receptor-related protein 8 i...
LOC100291777          0.038   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.038   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.038   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.038   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.038   deleted in malignant brain tumors 1 isoform a precu...
LRP6                  0.038   low density lipoprotein receptor-related protein 6 ...
VLDLR                 0.037   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.037   very low density lipoprotein receptor isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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