Guide to the Human Genome
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Name: LDLRAD3 Sequence: fasta or formatted (345aa) NCBI GI: 28557796
Description:

low density lipoprotein receptor class A domain containing 3

Referenced in:

Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            5.8         20           1
 D aspartate           5.2         18           1
 E glutamate           6.4         22           2
 F phenylalanine       2.9         10           2
 G glycine             6.7         23           1
 H histidine           2.9         10           2
 I isoleucine          3.5         12           2
 K lysine              2.3          8           1
 L leucine             9.3         32           3
 M methionine          0.9          3           1
 N asparagine          6.7         23           2
 P proline             8.4         29           4
 Q glutamine           5.2         18           1
 R arginine            3.5         12           1
 S serine             11.9         41           2
 T threonine           3.5         12           1
 V valine              5.2         18           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor class A domain cont... 
LRP2                  0.136   low density lipoprotein-related protein 2 
LRP8                  0.134   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.131   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.131   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.129   low density lipoprotein receptor-related protein 8 i...
LRP1                  0.128   low density lipoprotein-related protein 1 
LRP4                  0.128   low density lipoprotein receptor-related protein 4 ...
LRP1B                 0.124   low density lipoprotein-related protein 1B precursor...
LRP6                  0.121   low density lipoprotein receptor-related protein 6 ...
VLDLR                 0.118   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.118   very low density lipoprotein receptor isoform a [Hom...
LRP5                  0.118   low density lipoprotein receptor-related protein 5 ...
SORL1                 0.115   sortilin-related receptor containing LDLR class A rep...
CORIN                 0.115   corin 
HSPG2                 0.111   heparan sulfate proteoglycan 2 
TMPRSS7               0.108   transmembrane protease, serine 7 
ST14                  0.107   matriptase 
LDLR                  0.105   low density lipoprotein receptor precursor 
SSPO                  0.101   SCO-spondin 
LRP3                  0.094   low density lipoprotein receptor-related protein 3 ...
LRP12                 0.092   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.092   low density lipoprotein-related protein 12 isoform a ...
LRP10                 0.088   low density lipoprotein receptor-related protein 10 ...
TMPRSS6               0.087   transmembrane protease, serine 6 
CD320                 0.068   8D6 antigen 
C10orf112             0.067   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.067   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.064   PREDICTED: chromosome 10 open reading frame 112 [Ho...
CFI                   0.050   complement factor I preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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