Guide to the Human Genome
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Name: LRP6 Sequence: fasta or formatted (1613aa) NCBI GI: 148727288
Description:

low density lipoprotein receptor-related protein 6

Referenced in:

Epidermal Growth Factor
Lipoproteins
Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         96           3
 C cysteine            3.3         53           1
 D aspartate           7.6        122           2
 E glutamate           5.5         89           2
 F phenylalanine       2.9         46           2
 G glycine             6.9        111           2
 H histidine           2.3         37           2
 I isoleucine          6.0         96           3
 K lysine              3.5         56           2
 L leucine             8.7        140           4
 M methionine          1.9         31           1
 N asparagine          4.3         69           4
 P proline             5.6         91           4
 Q glutamine           3.3         54           3
 R arginine            6.0         97           2
 S serine              8.5        137           7
 T threonine           5.8         93           2
 V valine              6.1         98           3
 W tryptophan          2.2         35           1
 Y tyrosine            3.8         62           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 6 ... 
LRP5                  0.704   low density lipoprotein receptor-related protein 5 ...
LRP4                  0.323   low density lipoprotein receptor-related protein 4 ...
LRP1                  0.238   low density lipoprotein-related protein 1 
LRP1B                 0.222   low density lipoprotein-related protein 1B precursor...
LRP2                  0.199   low density lipoprotein-related protein 2 
LRP5L                 0.091   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.091   low density lipoprotein receptor-related protein 5-...
VLDLR                 0.066   very low density lipoprotein receptor isoform a [Hom...
LRP8                  0.066   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.066   low density lipoprotein receptor-related protein 8 i...
VLDLR                 0.065   very low density lipoprotein receptor isoform b [Hom...
LRP8                  0.065   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.065   low density lipoprotein receptor-related protein 8 i...
EGF                   0.064   epidermal growth factor (beta-urogastrone) 
LDLR                  0.062   low density lipoprotein receptor precursor 
SORL1                 0.054   sortilin-related receptor containing LDLR class A rep...
NID1                  0.049   nidogen 1 precursor 
NID2                  0.045   nidogen 2 precursor 
LDLRAD3               0.026   low density lipoprotein receptor class A domain cont...
HSPG2                 0.025   heparan sulfate proteoglycan 2 
CORIN                 0.023   corin 
ST14                  0.023   matriptase 
SSPO                  0.023   SCO-spondin 
LRP12                 0.020   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.020   low density lipoprotein-related protein 12 isoform a ...
C10orf112             0.019   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.019   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.019   PREDICTED: chromosome 10 open reading frame 112 [Ho...
LRP3                  0.019   low density lipoprotein receptor-related protein 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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