Guide to the Human Genome
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Name: LRP5L Sequence: fasta or formatted (252aa) NCBI GI: 209447022
Description:

low density lipoprotein receptor-related protein 5-like

Referenced in:

Epidermal Growth Factor
Lipoproteins

Other entries for this name:
alt mRNA [252aa] low density lipoprotein receptor-related protein 5-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         22           2
 C cysteine            1.2          3           1
 D aspartate           8.3         21           2
 E glutamate           5.2         13           1
 F phenylalanine       1.2          3           1
 G glycine             6.3         16           2
 H histidine           4.0         10           2
 I isoleucine          6.3         16           2
 K lysine              5.6         14           1
 L leucine             9.5         24           2
 M methionine          1.6          4           1
 N asparagine          5.2         13           1
 P proline             4.4         11           1
 Q glutamine           2.8          7           1
 R arginine            5.6         14           2
 S serine              4.4         11           2
 T threonine           6.7         17           1
 V valine              6.3         16           2
 W tryptophan          4.4         11           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 5-... 
LRP5L                 1.000   low density lipoprotein receptor-related protein 5-l...
LRP5                  0.741   low density lipoprotein receptor-related protein 5 ...
LRP6                  0.602   low density lipoprotein receptor-related protein 6 ...
LRP4                  0.352   low density lipoprotein receptor-related protein 4 ...
LRP1                  0.299   low density lipoprotein-related protein 1 
LRP1B                 0.269   low density lipoprotein-related protein 1B precursor...
LRP2                  0.236   low density lipoprotein-related protein 2 
EGF                   0.218   epidermal growth factor (beta-urogastrone) 
LRP8                  0.212   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.212   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.212   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.212   low density lipoprotein receptor-related protein 8 i...
NID2                  0.202   nidogen 2 precursor 
VLDLR                 0.200   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.200   very low density lipoprotein receptor isoform a [Hom...
LDLR                  0.198   low density lipoprotein receptor precursor 
SORL1                 0.192   sortilin-related receptor containing LDLR class A rep...
NID1                  0.188   nidogen 1 precursor 
TTC5                  0.010   tetratricopeptide repeat domain 5 
C14orf43              0.008   hypothetical protein LOC91748 
GPR182                0.008   G protein-coupled receptor 182 
C14orf43              0.008   hypothetical protein LOC91748 
TFR2                  0.008   transferrin receptor 2 
LOC283710             0.006   PREDICTED: hypothetical protein 
LOC100129932          0.006   PREDICTED: hypothetical protein 
LOC100129932          0.006   PREDICTED: hypothetical protein 
LOC100129932          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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