Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FBN3 Sequence: fasta or formatted (2809aa) NCBI GI: 56237021
Description:

fibrillin 3 precursor

Referenced in:

Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3        150           2
 C cysteine           12.7        356           3
 D aspartate           6.1        170           2
 E glutamate           5.9        165           2
 F phenylalanine       3.8        108           2
 G glycine            12.3        345           3
 H histidine           2.8         78           2
 I isoleucine          2.6         72           2
 K lysine              1.4         40           1
 L leucine             6.8        190           3
 M methionine          1.4         38           2
 N asparagine          4.6        130           2
 P proline             6.3        177           2
 Q glutamine           3.8        107           2
 R arginine            5.7        161           3
 S serine              6.0        169           4
 T threonine           5.2        146           2
 V valine              4.7        133           2
 W tryptophan          0.7         19           1
 Y tyrosine            2.0         55           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibrillin 3 precursor 
FBN2                  0.711   fibrillin 2 precursor 
FBN1                  0.635   fibrillin 1 precursor 
LTBP4                 0.089   latent transforming growth factor beta binding prot...
LTBP4                 0.089   latent transforming growth factor beta binding prot...
LTBP4                 0.089   latent transforming growth factor beta binding prot...
LTBP1                 0.081   latent transforming growth factor beta binding prote...
LTBP1                 0.081   latent transforming growth factor beta binding prote...
LTBP2                 0.076   latent transforming growth factor beta binding protei...
NOTCH1                0.075   notch1 preproprotein 
NOTCH2                0.071   notch 2 preproprotein 
LTBP3                 0.071   latent transforming growth factor beta binding prot...
NOTCH3                0.066   Notch homolog 3 
LTBP3                 0.064   latent transforming growth factor beta binding prote...
NOTCH4                0.051   notch4 preproprotein 
MEGF6                 0.045   EGF-like-domain, multiple 3 
MATN2                 0.042   matrilin 2 isoform b precursor 
MATN2                 0.042   matrilin 2 isoform a precursor 
FBLN2                 0.042   fibulin 2 isoform a precursor 
FBLN2                 0.038   fibulin 2 isoform b precursor 
FBLN1                 0.036   fibulin 1 isoform B precursor 
FBLN1                 0.036   fibulin 1 isoform A precursor 
FBLN1                 0.036   fibulin 1 isoform D 
HMCN1                 0.035   hemicentin 1 
SCUBE3                0.034   signal peptide, CUB domain, EGF-like 3 
FBLN1                 0.033   fibulin 1 isoform C precursor 
EYS                   0.033   eyes shut homolog isoform 1 
JAG1                  0.031   jagged 1 precursor 
JAG2                  0.030   jagged 2 isoform a precursor 
SCUBE2                0.029   CEGP1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press