Guide to the Human Genome
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Name: LRP8 Sequence: fasta or formatted (700aa) NCBI GI: 61744467
Description:

low density lipoprotein receptor-related protein 8 isoform 3 precursor

Referenced in:

Epidermal Growth Factor
Lipoproteins

Other entries for this name:
alt prot [963aa] low density lipoprotein receptor-related protein 8 isoform 1 prec...
alt prot [904aa] low density lipoprotein receptor-related protein 8 isoform 4 prec...
alt prot [793aa] low density lipoprotein receptor-related protein 8 isoform 2 prec...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         45           5
 C cysteine            6.3         44           1
 D aspartate           9.0         63           3
 E glutamate           6.7         47           3
 F phenylalanine       2.4         17           1
 G glycine             7.1         50           2
 H histidine           2.7         19           1
 I isoleucine          5.1         36           2
 K lysine              5.4         38           2
 L leucine            10.0         70          11
 M methionine          1.4         10           1
 N asparagine          4.3         30           2
 P proline             5.1         36           1
 Q glutamine           3.3         23           1
 R arginine            4.6         32           3
 S serine              6.4         45           2
 T threonine           4.4         31           2
 V valine              4.6         32           2
 W tryptophan          2.0         14           1
 Y tyrosine            2.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 8 i... 
LRP8                  0.691   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.691   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.671   low density lipoprotein receptor-related protein 8 i...
LDLR                  0.460   low density lipoprotein receptor precursor 
VLDLR                 0.460   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.456   very low density lipoprotein receptor isoform a [Hom...
LRP4                  0.293   low density lipoprotein receptor-related protein 4 ...
LRP1B                 0.283   low density lipoprotein-related protein 1B precursor...
LRP1                  0.276   low density lipoprotein-related protein 1 
LRP2                  0.261   low density lipoprotein-related protein 2 
LRP6                  0.147   low density lipoprotein receptor-related protein 6 ...
LRP5                  0.147   low density lipoprotein receptor-related protein 5 ...
EGF                   0.147   epidermal growth factor (beta-urogastrone) 
SORL1                 0.096   sortilin-related receptor containing LDLR class A rep...
NID1                  0.085   nidogen 1 precursor 
NID2                  0.083   nidogen 2 precursor 
LRP5L                 0.073   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.073   low density lipoprotein receptor-related protein 5-...
SSPO                  0.070   SCO-spondin 
LDLRAD3               0.064   low density lipoprotein receptor class A domain cont...
ST14                  0.062   matriptase 
HSPG2                 0.061   heparan sulfate proteoglycan 2 
CORIN                 0.057   corin 
CD320                 0.056   8D6 antigen 
MEGF6                 0.053   EGF-like-domain, multiple 3 
SCUBE1                0.046   signal peptide, CUB domain, EGF-like 1 
C10orf112             0.044   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.044   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.044   PREDICTED: chromosome 10 open reading frame 112 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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