Search of human proteins with 156105673

Search of human proteins with 156105673

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156105673 methyl-CpG binding domain protein 1 isoform 3
[Homo sapiens]
         (549 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo...  1159   0.0  
gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo ...  1121   0.0  
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s...  1025   0.0  
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho...   990   0.0  
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ...   934   0.0  
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i...    86   1e-16
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    86   1e-16
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]          74   3e-13
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    54   4e-07
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]     54   5e-07
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]       54   5e-07
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    51   3e-06
gi|27735129 hypothetical protein LOC148345 [Homo sapiens]              50   7e-06
gi|24797153 faciogenital dysplasia protein [Homo sapiens]              47   5e-05
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa...    47   6e-05
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]       46   8e-05
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]       46   8e-05
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi...    45   2e-04
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]        44   3e-04
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]      44   3e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         44   3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni...    44   4e-04
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         43   7e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          43   7e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          43   7e-04
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          43   7e-04
gi|13699803 WAS protein family, member 3 [Homo sapiens]                42   0.001
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    42   0.001
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    42   0.002
gi|13273315 homeobox B4 [Homo sapiens]                                 42   0.002

>gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo
           sapiens]
          Length = 549

 Score = 1159 bits (2999), Expect = 0.0
 Identities = 549/549 (100%), Positives = 549/549 (100%)

Query: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
           MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60

Query: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
           LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120

Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
           DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180

Query: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
           ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240

Query: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
           PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300

Query: 301 TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH 360
           TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH
Sbjct: 301 TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH 360

Query: 361 LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS 420
           LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS
Sbjct: 361 LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS 420

Query: 421 TEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPS 480
           TEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPS
Sbjct: 421 TEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPS 480

Query: 481 VKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD 540
           VKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD
Sbjct: 481 VKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD 540

Query: 541 LKKPGARKQ 549
           LKKPGARKQ
Sbjct: 541 LKKPGARKQ 549


>gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo
           sapiens]
          Length = 605

 Score = 1121 bits (2899), Expect = 0.0
 Identities = 544/605 (89%), Positives = 547/605 (90%), Gaps = 56/605 (9%)

Query: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
           MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60

Query: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
           LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120

Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
           DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180

Query: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
           ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240

Query: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
           PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300

Query: 301 TEPHPRALAPSPPAEFIYY------------------------------------CVDED 324
           TEPHPRALAPSPPAEFIYY                                    C D+ 
Sbjct: 301 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 360

Query: 325 E--------------------LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 364
           +                    +KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 361 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 420

Query: 365 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 424
           LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 421 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 480

Query: 425 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 484
           LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE
Sbjct: 481 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 540

Query: 485 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 544
           PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP
Sbjct: 541 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 600

Query: 545 GARKQ 549
           GARKQ
Sbjct: 601 GARKQ 605


>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
           sapiens]
          Length = 503

 Score = 1025 bits (2650), Expect = 0.0
 Identities = 497/549 (90%), Positives = 497/549 (90%), Gaps = 46/549 (8%)

Query: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
           MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60

Query: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
           LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120

Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
           DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180

Query: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
           ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240

Query: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
           PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300

Query: 301 TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH 360
           TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH
Sbjct: 301 TEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHH 360

Query: 361 LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS 420
           LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS
Sbjct: 361 LGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAAS 420

Query: 421 TEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPS 480
           TEALLQ            LP VKQ                                    
Sbjct: 421 TEALLQAVD-------PGLPSVKQ------------------------------------ 437

Query: 481 VKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD 540
              EPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD
Sbjct: 438 ---EPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKD 494

Query: 541 LKKPGARKQ 549
           LKKPGARKQ
Sbjct: 495 LKKPGARKQ 503


>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Homo
           sapiens]
          Length = 556

 Score =  990 bits (2559), Expect = 0.0
 Identities = 494/605 (81%), Positives = 498/605 (82%), Gaps = 105/605 (17%)

Query: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
           MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60

Query: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
           LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120

Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
           DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMF         
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMF--------- 171

Query: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
                                                   +SRGCGVCRGCQTQEDCGHC
Sbjct: 172 ----------------------------------------KSRGCGVCRGCQTQEDCGHC 191

Query: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
           PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 192 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 251

Query: 301 TEPHPRALAPSPPAEFIYY------------------------------------CVDED 324
           TEPHPRALAPSPPAEFIYY                                    C D+ 
Sbjct: 252 TEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKP 311

Query: 325 E--------------------LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 364
           +                    +KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
Sbjct: 312 KFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT 371

Query: 365 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 424
           LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL
Sbjct: 372 LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEAL 431

Query: 425 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 484
           LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE
Sbjct: 432 LQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQE 491

Query: 485 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 544
           PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP
Sbjct: 492 PPDPEEDKEENKDDSASKLAPEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKP 551

Query: 545 GARKQ 549
           GARKQ
Sbjct: 552 GARKQ 556


>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
           sapiens]
          Length = 586

 Score =  934 bits (2413), Expect = 0.0
 Identities = 465/569 (81%), Positives = 469/569 (82%), Gaps = 79/569 (13%)

Query: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60
           MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT
Sbjct: 1   MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLT 60

Query: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120
           LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT
Sbjct: 61  LFDFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADT 120

Query: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180
           DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA
Sbjct: 121 DTAPASFPAPGCCENCGISFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECA 180

Query: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240
           ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC
Sbjct: 181 ACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERSRGCGVCRGCQTQEDCGHC 240

Query: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300
           PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP
Sbjct: 241 PICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEP 300

Query: 301 TEPHP-------------RALAPSPPAEFIYYCVDEDE--------------------LK 327
           TEP P              A           +C D+ +                    +K
Sbjct: 301 TEPQPYTNRRQNRKCGACAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMK 360

Query: 328 RLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEA 387
           RLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEA
Sbjct: 361 RLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEA 420

Query: 388 GGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKA 447
           GGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQ            LP VKQ   
Sbjct: 421 GGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQAVD-------PGLPSVKQ--- 470

Query: 448 DTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEE 507
                                               EPPDPEEDKEENKDDSASKLAPEE
Sbjct: 471 ------------------------------------EPPDPEEDKEENKDDSASKLAPEE 494

Query: 508 EAGGAGTPVITEIFSLGGTRFRDTAVWLP 536
           EAGGAGTPVITEIFSLGGTRFRDTAVWLP
Sbjct: 495 EAGGAGTPVITEIFSLGGTRFRDTAVWLP 523


>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
           isoform [Homo sapiens]
          Length = 302

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 7/92 (7%)

Query: 6   LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFK 65
           +DCPAL PGWK+ EV RKSG + G+SD YY SP+G + RSK +L RYLG   DL+ FDF+
Sbjct: 150 MDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFR 209

Query: 66  QGILCYPAPKAHPVAVASKKRKKPSRPAKTRK 97
            G       K  P  +   K++  + P    K
Sbjct: 210 TG-------KMMPSKLQKNKQRLRNDPLNQNK 234


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 7/92 (7%)

Query: 6   LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFK 65
           +DCPAL PGWK+ EV RKSG + G+SD YY SP+G + RSK +L RYLG   DL+ FDF+
Sbjct: 150 MDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFR 209

Query: 66  QGILCYPAPKAHPVAVASKKRKKPSRPAKTRK 97
            G       K  P  +   K++  + P    K
Sbjct: 210 TG-------KMMPSKLQKNKQRLRNDPLNQNK 234


>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
          Length = 291

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
          +CPAL  GW+R EV R+SG + G  D +Y SP+G + RSK +L RYLG + DL+ FDF+ 
Sbjct: 7  ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT 66

Query: 67 G 67
          G
Sbjct: 67 G 67


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 30/176 (17%)

Query: 221  RSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRCLRGKHARRKGGCDSK 277
            R   CG CRGC   +DCG C  CL  P+   P  ++Q  CV R+C   K   RK     +
Sbjct: 962  RMARCGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQC-CVYRKC--DKIEARK---MER 1015

Query: 278  MAARRRPGAQPLPPPPPSQSPE--PTEPHPR--ALAPSPPAEFIYYCVDEDE-------- 325
            +A + R   + L P    +SPE  P  P PR  A A  P  E + +   E++        
Sbjct: 1016 LAKKGRTIVKTLLPWDSDESPEASPGPPGPRRGAGAGGPREEVVAHPGPEEQDSLLQRKS 1075

Query: 326  -----LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQP 376
                  +R    ++ +S+D     PP  RR+ P    R +  P  +P   +R  +P
Sbjct: 1076 ARRCVKQRPSYDIFEDSDDSEPGGPPAPRRRTP----RENELPLPEPEEQSRPRKP 1127



 Score = 36.2 bits (82), Expect = 0.080
 Identities = 38/126 (30%), Positives = 45/126 (35%), Gaps = 25/126 (19%)

Query: 284 PGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGS 343
           P   P P PPP   P  T P P    P PP       V    L    P    E ++   S
Sbjct: 405 PLTPPAPSPPPPLPPPSTSPPPPLCPPPPPP------VSPPPLPSPPPPPAQEEQE--ES 456

Query: 344 PPPY------RRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQ--APTKQEAGGGFVLPP 395
           PPP       R+R RP       L P+ +       A P+ T    PT   A GG   PP
Sbjct: 457 PPPVVPATCSRKRGRPP------LTPSQRAEREAARAGPEGTSPPTPTPSTATGG---PP 507

Query: 396 PGTDLV 401
             +  V
Sbjct: 508 EDSPTV 513



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 176 CGECAACQVTEDCGACSTCL 195
           CG C  C   +DCG+C  CL
Sbjct: 966 CGHCRGCLRVQDCGSCVNCL 985



 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 281 RRRPGAQPLPPPPPSQSPEP 300
           R  P   P PPPPP+ SP P
Sbjct: 616 RELPPPPPAPPPPPAPSPPP 635


>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
          Length = 498

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 40/113 (35%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 7   DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL----F 62
           D P L  GW R+   RKSG + G+ D Y  +P G   RSKVEL  Y     D +L    F
Sbjct: 108 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 167

Query: 63  DFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
           DF       P+ +        KK K P  P   R R     SG  R +A   E
Sbjct: 168 DFTVTGRGSPSRREQK---PPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSE 217


>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
          Length = 486

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 40/113 (35%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 7   DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL----F 62
           D P L  GW R+   RKSG + G+ D Y  +P G   RSKVEL  Y     D +L    F
Sbjct: 96  DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155

Query: 63  DFKQGILCYPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
           DF       P+ +        KK K P  P   R R     SG  R +A   E
Sbjct: 156 DFTVTGRGSPSRREQK---PPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSE 205


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
            sapiens]
          Length = 3969

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 47/190 (24%)

Query: 221  RSRGCGVCRGCQTQEDCGHCPICLRPPRPG-------------------------LRRQW 255
            RSR CG C GCQ  EDCG C  CL  P+ G                         L++Q 
Sbjct: 1151 RSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQA 1210

Query: 256  KCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAE 315
            K V+++  + K + +K   DSK ++  +        P PS   +P    P+  +  PP  
Sbjct: 1211 KAVKKKEKKSKTSEKK---DSKESSVVKNVVDSSQKPTPSAREDPA---PKKSSSEPPPR 1264

Query: 316  FIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQ 375
                             V  +SE+G  S P    ++  + A R       +P L     Q
Sbjct: 1265 ---------------KPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVI-PPQ 1308

Query: 376  PDHTQAPTKQ 385
            P  T  P K+
Sbjct: 1309 PPTTGPPRKE 1318


>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
          Length = 656

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 73/285 (25%), Positives = 106/285 (37%), Gaps = 47/285 (16%)

Query: 266 KHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDE 325
           K ARR  G  S     R   AQ  P PPP ++  P  P P A  PS P E +        
Sbjct: 274 KPARR--GQTSASILPRVVQAQRGPQPPPGEAGIPGHPTPPATLPSEPVEGVQ--ASPWR 329

Query: 326 LKRLLPS----VWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQA 381
            + +LP+        S D +   PP  R +RP S      GP++  T    T +P+  Q 
Sbjct: 330 PRPVLPTHPALTLPVSSDASSPSPPAPRPERPESLLVS--GPSVTLTEGLGTVRPE--QD 385

Query: 382 PTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSW--VVAL 439
           P K           PG+ L+ LR  +S  V  P P+        +E Q     W   +A 
Sbjct: 386 PAKS----------PGSPLL-LRGLSSGDVAAPEPIMGEPGQASEEFQPLARPWRATLAA 434

Query: 440 PQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDS 499
            ++   ++  + + T     +  P        +   PGL         P E    + D S
Sbjct: 435 EELVSHRSPGEPQETCSGTEVERP--------RQTGPGL---------PREGARGHMDLS 477

Query: 500 ASKLAPEEEAGGAG---TPVITEIFSLGGTRFRDTAVWLPRSKDL 541
           +S+  P ++  G G    P     FS    R  D + WL    +L
Sbjct: 478 SSE--PSQDIEGPGLSILPARDATFSTPSVRQPDPSAWLSSGPEL 520


>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
          Length = 961

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 32/231 (13%)

Query: 281 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDG 340
           +R PG +P  PP PS    P  P P    P PP+  +    D    K L P   +     
Sbjct: 152 KRAPGPKPQVPPKPSYLQMPRMPPPLEPIPPPPSRPL--PADPRVAKGLAPRAEASPSSA 209

Query: 341 AGSPPPYRRRKRP--SSARRHHLGPTLKP----TLATRTAQPDHTQAPTKQEAGGGFVLP 394
           A S    +  + P   ++ R   GP+  P     L   T+QP   Q P  + +   F+L 
Sbjct: 210 AVSSLIEKFEREPVIVASDRPVPGPSPGPPEPVMLPQPTSQPPVPQLPEGEASRCLFLLA 269

Query: 395 PPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWT 454
           P        R+G   P +  G  + S+                  P   +E     D+  
Sbjct: 270 PGP------RDGEKVPNRDSGIDSISS------------------PSNSEETCFVSDDGP 305

Query: 455 PGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAP 505
           P  ++   P  +   P    DP  P  ++   D EE+ +E +++   +  P
Sbjct: 306 PSHSLCPGPPALASVPVALADPHRPGSQEVDSDLEEEDDEEEEEEKDREIP 356


>gi|17136078 VGF nerve growth factor inducible precursor [Homo
           sapiens]
          Length = 615

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 40/120 (33%), Positives = 49/120 (40%), Gaps = 21/120 (17%)

Query: 281 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDEL---KRLLPSVWSES 337
           +R+  A P P PPP  +P PT  H R+  P PPA         DEL     +LP  W   
Sbjct: 481 KRKKNAPPEPVPPPRAAPAPT--HVRSPQPPPPAP----APARDELPDWNEVLPP-WDRE 533

Query: 338 EDGAGSPPPY---------RRRKRPSSARRHHLGPTLKPT--LATRTAQPDHTQAPTKQE 386
           ED    P PY         R  + PS+ RR H    L P+     R AQ    Q   + E
Sbjct: 534 EDEVYPPGPYHPFPNYIRPRTLQPPSALRRRHYHHALPPSRHYPGREAQARRAQEEAEAE 593


>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
          Length = 660

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 217 RIVERSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRC-LRGKHARRKG 272
           +I   +R CG C  C+  EDCGHC  C    +   P   RQ KC  R+C LR + + +  
Sbjct: 161 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLRQCQLRARESYKYF 219

Query: 273 GCDSKMAARRRPGAQPLPPPPPSQSPEPTE 302
                         +P  P P  Q P+P++
Sbjct: 220 PSSLSPVTPSESLPRPRRPLPTQQQPQPSQ 249



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 166 REQRMFKRVG--CGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRC 215
           ++Q+  KR    CGEC AC+ TEDCG C  C         + +  KC  R+C
Sbjct: 157 QQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQC 208


>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
          Length = 656

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 217 RIVERSRGCGVCRGCQTQEDCGHCPICLRPPR---PGLRRQWKCVQRRC-LRGKHARRKG 272
           +I   +R CG C  C+  EDCGHC  C    +   P   RQ KC  R+C LR + + +  
Sbjct: 161 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLRQCQLRARESYKYF 219

Query: 273 GCDSKMAARRRPGAQPLPPPPPSQSPEPTE 302
                         +P  P P  Q P+P++
Sbjct: 220 PSSLSPVTPSESLPRPRRPLPTQQQPQPSQ 249



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 166 REQRMFKRVG--CGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRC 215
           ++Q+  KR    CGEC AC+ TEDCG C  C         + +  KC  R+C
Sbjct: 157 QQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQC 208


>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
           sapiens]
          Length = 694

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 62/253 (24%), Positives = 82/253 (32%), Gaps = 71/253 (28%)

Query: 139 SFSGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECAACQVTEDCGACS----TC 194
           S  G G   +R +T C+ CRA             R  CG+C  C+  +  G       +C
Sbjct: 24  SSRGPGAGARRRRTRCRRCRA-----------CVRTECGDCHFCRDMKKFGGPGRMKQSC 72

Query: 195 LLQ------LPHDVASGLFCKCERRRCLRIVERSRG-----CGVCR-----GCQTQ---- 234
           LL+      LPH     L  +  +   +   E   G     C +C      GC       
Sbjct: 73  LLRQCTAPVLPHTAVCLLCGEAGKEDTVEGEEEKFGLSLMECTICNEIVHPGCLKMGKAE 132

Query: 235 -------EDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQ 287
                   +C  CP C +  R          +RR   G+     G   S       P   
Sbjct: 133 GVINAEIPNCWECPRCTQEGRTSKDSGEGPGRRRADNGEEGASLG---SGWKLTEEP--- 186

Query: 288 PLPPPPP-SQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPP 346
           PLPPPPP  + P P  P P  + P PP                        E  AG+ PP
Sbjct: 187 PLPPPPPRRKGPLPAGPPPEDV-PGPP---------------------KRKEREAGNEPP 224

Query: 347 YRRRKRPSSARRH 359
             R+K      RH
Sbjct: 225 TPRKKVKGGRERH 237


>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
          Length = 1111

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 24/185 (12%)

Query: 284 PGAQPLPPPPPS---------QSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVW 334
           PG  P PPPPP             EP  PH  A+        +++      L +LL    
Sbjct: 177 PGPPPPPPPPPHYPVLQRDLYMKAEPPIPHYAAMGQGLVPTDLHHTQQSQMLHQLL---- 232

Query: 335 SESEDGAGSPP-PYRRRKR----PSSARRHHLGPTLKPTLATRTAQPDH-TQAPTKQEAG 388
              + GA  P  P ++RK     PS+     L   +K    T TA P H T+AP+     
Sbjct: 233 --QQHGAELPTHPSKKRKHSESPPSTLNAQMLNGMIKQEPGTVTALPLHPTRAPSPPWPP 290

Query: 389 GGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKAD 448
            G + P PG+  + +    + P   PG   A +  LLQ++     S++    Q  + +  
Sbjct: 291 QGPLSPGPGSLPLSIARVQTPPWHPPG---APSPGLLQDSDSLSGSYLDPNYQSIKWQPH 347

Query: 449 TQDEW 453
            Q++W
Sbjct: 348 QQNKW 352


>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
          Length = 1151

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 24/185 (12%)

Query: 284 PGAQPLPPPPPS---------QSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVW 334
           PG  P PPPPP             EP  PH  A+        +++      L +LL    
Sbjct: 186 PGPPPPPPPPPHYPVLQRDLYMKAEPPIPHYAAMGQGLVPTDLHHTQQSQMLHQLL---- 241

Query: 335 SESEDGAGSPP-PYRRRKR----PSSARRHHLGPTLKPTLATRTAQPDH-TQAPTKQEAG 388
              + GA  P  P ++RK     PS+     L   +K    T TA P H T+AP+     
Sbjct: 242 --QQHGAELPTHPSKKRKHSESPPSTLNAQMLNGMIKQEPGTVTALPLHPTRAPSPPWPP 299

Query: 389 GGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKAD 448
            G + P PG+  + +    + P   PG   A +  LLQ++     S++    Q  + +  
Sbjct: 300 QGPLSPGPGSLPLSIARVQTPPWHPPG---APSPGLLQDSDSLSGSYLDPNYQSIKWQPH 356

Query: 449 TQDEW 453
            Q++W
Sbjct: 357 QQNKW 361


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 50/241 (20%), Positives = 85/241 (35%), Gaps = 23/241 (9%)

Query: 290 PPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRR 349
           PPPPP +   P+ P  R ++ SPP +           KR  PS+ S+   G+      R 
Sbjct: 617 PPPPPKRRASPSPPPKRRVSHSPPPK----QRSSPVTKRRSPSLSSKHRKGSSPSRSTRE 672

Query: 350 RKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGG---FVLPPPGTDLVFLREG 406
            + P   +RH       P+   R  Q   +  P ++ A         P P T  +     
Sbjct: 673 ARSPQPNKRH------SPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSR 726

Query: 407 ASSPVQVPGPVAASTEALLQEAQCSGLSW----VVALPQVKQEKADTQD---EWTPGTAV 459
              P ++    + S +++ + +    +S         P        +Q     W+P   V
Sbjct: 727 TPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPV 786

Query: 460 --LTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPEEEAGGAGTPVI 517
               SP   P  P  +   G    K++  D ++ K++ K     K   E+    A    +
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGKKKKKKKD-KKHKKDKKHKKHKKHKKEKAVAAAAAAAV 845

Query: 518 T 518
           T
Sbjct: 846 T 846



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 64/269 (23%), Positives = 92/269 (34%), Gaps = 50/269 (18%)

Query: 269 RRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAE------------- 315
           RR+         RRR    P P PPP +   PT P PR   PSPP               
Sbjct: 545 RRRRSPSPPPTRRRR---SPSPAPPPRRRRTPTPP-PRRRTPSPPPRRRSPSPRRYSPPI 600

Query: 316 FIYYCVDEDELKRLLPSVWSESEDGAGSPPPYRR----------------RKRPSSARRH 359
              Y       +R            + SPPP RR                R+ PS + +H
Sbjct: 601 QRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKH 660

Query: 360 HLGPT-LKPTLATRTAQPDHTQAPT-KQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPV 417
             G +  + T   R+ QP+   +P+ +  A      PPP      +R GASS  Q     
Sbjct: 661 RKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPP------VRRGASSSPQRRQSP 714

Query: 418 AASTEALLQEAQCSGLSWV--VALP---QVKQEKADTQDEWTPGTAVLTSPV----LVPG 468
           + ST  + + ++      +   A P    V++  +      +P  A    P     +   
Sbjct: 715 SPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQ 774

Query: 469 CPSKAVDPGLPSVKQEPPDPEEDKEENKD 497
            PS    P +P  K + P P      N D
Sbjct: 775 SPSTNWSPAVPVKKAKSPTPSPSPPRNSD 803



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 246 PPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPE------ 299
           PP P  RR    V+RR  R   A   G   S  ++R R  + P  PP  + SP       
Sbjct: 333 PPPPRHRRSRSPVRRR--RRSSASLSGSSSSSSSSRSR--SPPKKPPKRTSSPPRKTRRL 388

Query: 300 --PTEPHPRALAPSPPA 314
                P  R   PSPPA
Sbjct: 389 SPSASPPRRRHRPSPPA 405


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 63/242 (26%), Positives = 87/242 (35%), Gaps = 44/242 (18%)

Query: 284  PGAQPLPPP--PPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGA 341
            P   P PP   PPS    P  P P+  AP+PPA          +    LP+    S+ G 
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKG-APTPPA----VTPPSPKGTPTLPATTPSSKGGP 1360

Query: 342  GSPPPYRRRKRPSSARRHHLGPTLKPTLATR-TAQPDHTQAPTKQEAGGGFVLPPPGTDL 400
             +P        P++   H  GP + P    R  A P     PT            P T +
Sbjct: 1361 TTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPV 1420

Query: 401  VFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVL 460
               REGA++P +      A T   L++A                          P T+  
Sbjct: 1421 T--REGAATPSKGDLTPPAVTPVSLKKA--------------------------PATS-- 1450

Query: 461  TSPVLVPGCPSKAVDPGLPSVKQEPPDPEED--KEENKDDSASKLAPEEEAGGAGTPVIT 518
             +P   P  PS   DP LP+V   PP P+E    ++    S+ K AP   A   G P + 
Sbjct: 1451 -APKGGPATPSSKGDPTLPAV--TPPSPKEPPAPKQVATSSSPKKAPATPA-PMGAPTLP 1506

Query: 519  EI 520
             +
Sbjct: 1507 AV 1508



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 59/244 (24%), Positives = 68/244 (27%), Gaps = 44/244 (18%)

Query: 276  SKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPS-VW 334
            S   AR  P  + +P  P   SP+     P A  PSP                  PS  W
Sbjct: 917  SPKKARATPAPKGIPASP---SPKGAPTPPAATPPSPKG------------GPATPSPKW 961

Query: 335  SESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLP 394
            + +   A  P P      PS            P+     A P    APT        V P
Sbjct: 962  APTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPA-----VTP 1016

Query: 395  PPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWT 454
            P             SP   P P  AST          G      LP+            T
Sbjct: 1017 P---------SPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP---------T 1058

Query: 455  PGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSA---SKLAPEEEAGG 511
               A L SP   P  PS    P  P+    PP P+          A       P    GG
Sbjct: 1059 TPAATLPSPKGGPATPSLKGAPTPPAA--TPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116

Query: 512  AGTP 515
              TP
Sbjct: 1117 LATP 1120



 Score = 29.3 bits (64), Expect = 9.8
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 288  PLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPS-------------VW 334
            P+P  PP Q   P+ P     +PS P        DEDEL  L+P              V 
Sbjct: 1806 PVPTLPPKQQFLPSSPGLVLESPSKPLA----PADEDELLPLIPPEPISGGVPFQSVLVN 1861

Query: 335  SESEDGAGSPPPYRRRKRPSSARRHHLG-PTLKPTLATRTAQPDHTQAPTKQ 385
              +   AG P P    K+P +      G  +          + D TQA T+Q
Sbjct: 1862 MPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDSDESVPELEEQDSTQATTQQ 1913


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 269 RRKGGCDSKMAARRRPGAQPLPPPP--PSQSPEPTEPHP-RALAPSPPAEFIYYCVDEDE 325
           +R+ GC+S+      P   PLPPPP  P   P P  P P   LA SPP +          
Sbjct: 228 KRRRGCNSEQTGL--PPGLPLPPPPLPPPPPPPPPPPPPLPGLATSPPFQL--------- 276

Query: 326 LKRLLPSVWSESEDGA------GSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHT 379
                P +WS     A      GS PP R+ +R S        P   P  A     P H 
Sbjct: 277 ---TKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPH-----PYPYPAPAYTAHPPGHR 328

Query: 380 QAPTKQEAGGGFVLPPPGTD 399
             P      G     PPG +
Sbjct: 329 LVPAAPPGPGP---RPPGAE 345



 Score = 37.0 bits (84), Expect = 0.047
 Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 31/244 (12%)

Query: 281 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDG 340
           ++ P A P PPPP ++ P P++P P    P  PA           LK L   +  +    
Sbjct: 769 KKPPPALP-PPPPLAKFPPPSQPQPPPPPPPSPASL---------LKSLASVLEGQKYCY 818

Query: 341 AGSPPPYRRRKRPSSARRHHLGP-----TLKPTLATRTA----QPDHTQAPTKQEAGGGF 391
            G+      R  P    ++  GP      L PT A  +A    QP  + +     +GG +
Sbjct: 819 RGTGAAVSTRPGPLPTTQYSPGPPSGATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPW 878

Query: 392 VLP-PPGTDLVFLREGASSPVQVPGPV----AASTEALLQEAQCSGLSWVVALPQVKQEK 446
                 G + V    G  +P Q P P+    A S   +L+E   +  + V  + +   + 
Sbjct: 879 ARERRAGEEPV---PGPMTPTQPPPPLSLPPARSESEVLEEISRACETLVERVGRSATDP 935

Query: 447 ADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSASKLAPE 506
           AD  D   P  +   +  L+P   +K    G+ +V          KE  K+    + A +
Sbjct: 936 ADPVDTAEPADS--GTERLLPPAQAKEEAGGVAAVSGS--CKRRQKEHQKEHRRHRRACK 991

Query: 507 EEAG 510
           +  G
Sbjct: 992 DSVG 995



 Score = 33.1 bits (74), Expect = 0.68
 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 284 PGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIY--YCVDEDELKRLLPSVWSESED-- 339
           P A P    PP  S  P  P PR L P PP  ++    C    E   +L  ++  +E   
Sbjct: 453 PAATPHLSLPPGPSSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPP 512

Query: 340 -GAGSPPPYRRRKRPSSARRHHLGPT---LKPTLATRTAQPDHTQAPTKQEAGGGFV-LP 394
             A  P P+R       A R  +G       PT  T T    ++ + +   +  G V  P
Sbjct: 513 RPAPPPLPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFP 572

Query: 395 PP 396
           PP
Sbjct: 573 PP 574



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 269  RRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEP-------HPRALAPSPP 313
            R K   D   A++ +P   P PP  P+ S +PT P         R  AP PP
Sbjct: 1031 REKSRPDLGGASKAKPPTAPAPPSAPAPSAQPTPPSASVPGKKAREEAPGPP 1082



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 246 PPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHP 305
           PP P  R  W       L G      G C + +     P   PLPP   S S  P++P+ 
Sbjct: 32  PPHPPPRSAW-------LPG------GRCSASIGQPPLPA--PLPPSHGSSSGHPSKPYY 76

Query: 306 RALAPSP-----PAEFIYYCVDEDELKRLLPSVWSE 336
              AP+P       E ++ CV     +   P +W +
Sbjct: 77  APGAPTPRPLHGKLESLHGCVQALLREPAQPGLWEQ 112



 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 288 PLP-PPPPSQSPE--PTEPHPRALAPSPPA 314
           PLP PP P+Q+P+  P  P   AL P+PP+
Sbjct: 583 PLPRPPSPAQNPQDPPLVPLTLALPPAPPS 612


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 56/214 (26%), Positives = 71/214 (33%), Gaps = 52/214 (24%)

Query: 276 SKMAARRRPGAQPLPPPP---PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPS 332
           S + +++ P  QPLPP P   P   P PT P P+  AP       +            PS
Sbjct: 351 SALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSG---------PS 401

Query: 333 VWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFV 392
            +S +   A  PPP                P LKP  +  T  P     P  Q       
Sbjct: 402 PFSMN---ANLPPP----------------PALKPLSSLSTHHPPSAHPPPLQLMPQSQP 442

Query: 393 LPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDE 452
           LP             SSP Q PG   +     L     S       L QV  +    Q  
Sbjct: 443 LP-------------SSPAQPPGLTQSQN---LPPPPASHPP--TGLHQVAPQPPFAQHP 484

Query: 453 WTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPP 486
           + PG      P+  P CPS +  P  P    +PP
Sbjct: 485 FVPGGP---PPITPPTCPSTSTPPAGPGTSAQPP 515


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 56/214 (26%), Positives = 71/214 (33%), Gaps = 52/214 (24%)

Query: 276  SKMAARRRPGAQPLPPPP---PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPS 332
            S + +++ P  QPLPP P   P   P PT P P+  AP       +            PS
Sbjct: 905  SALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSG---------PS 955

Query: 333  VWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFV 392
             +S +   A  PPP                P LKP  +  T  P     P  Q       
Sbjct: 956  PFSMN---ANLPPP----------------PALKPLSSLSTHHPPSAHPPPLQLMPQSQP 996

Query: 393  LPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDE 452
            LP             SSP Q PG   +     L     S       L QV  +    Q  
Sbjct: 997  LP-------------SSPAQPPGLTQSQN---LPPPPASHPP--TGLHQVAPQPPFAQHP 1038

Query: 453  WTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPP 486
            + PG      P+  P CPS +  P  P    +PP
Sbjct: 1039 FVPGGP---PPITPPTCPSTSTPPAGPGTSAQPP 1069


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 56/214 (26%), Positives = 71/214 (33%), Gaps = 52/214 (24%)

Query: 276  SKMAARRRPGAQPLPPPP---PSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPS 332
            S + +++ P  QPLPP P   P   P PT P P+  AP       +            PS
Sbjct: 905  SALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSG---------PS 955

Query: 333  VWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFV 392
             +S +   A  PPP                P LKP  +  T  P     P  Q       
Sbjct: 956  PFSMN---ANLPPP----------------PALKPLSSLSTHHPPSAHPPPLQLMPQSQP 996

Query: 393  LPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDE 452
            LP             SSP Q PG   +     L     S       L QV  +    Q  
Sbjct: 997  LP-------------SSPAQPPGLTQSQN---LPPPPASHPP--TGLHQVAPQPPFAQHP 1038

Query: 453  WTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPP 486
            + PG      P+  P CPS +  P  P    +PP
Sbjct: 1039 FVPGGP---PPITPPTCPSTSTPPAGPGTSAQPP 1069


>gi|13699803 WAS protein family, member 3 [Homo sapiens]
          Length = 502

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 266 KHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDE 325
           +H  R     ++  A  RP  Q  PPPPP Q+PE ++    A AP  PA++         
Sbjct: 283 EHEYRPPSASARHMALNRP--QQPPPPPPPQAPEGSQ----ASAPMAPADY--------- 327

Query: 326 LKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQ 385
              +LP+   E  + +G PPP      P SA+   + P   P      A    T A    
Sbjct: 328 --GMLPAQIIEYYNPSGPPPPPPPPVIP-SAQTAFVSPLQMPMQPPFPASASSTHAAPPH 384

Query: 386 EAGGGFVL---PPPG 397
               G ++   PPPG
Sbjct: 385 PPSTGLLVTAPPPPG 399


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
          Length = 2161

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 72/268 (26%), Positives = 87/268 (32%), Gaps = 43/268 (16%)

Query: 280  ARRRPGAQPLPPPPPSQSP-------EPTEPHP------RALAPSPPAEFIYYCVDEDEL 326
            A RR     LPP  P   P       EP  PHP      R+ AP  P     +    +  
Sbjct: 1439 AARRSLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENC 1498

Query: 327  KRLLPSVWSE---SEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQP---DHTQ 380
            +   P        SEDG G PPP  RR  P S       PT  P  +     P       
Sbjct: 1499 QPRAPVTSGRGPPSEDGPGVPPPSPRRSVPPS-------PT-SPRASEENGLPLLVLPPP 1550

Query: 381  APTKQEAGGGFV----LPPPGTDLVFLREGASSPVQVPGP--VAASTEALLQEAQCSGLS 434
            AP+     G F+    LPPP  +     E   SP+  PGP      T A           
Sbjct: 1551 APSVDVEDGEFLFVEPLPPP-LEFSNSFEKPESPL-TPGPPHPLPDTPAPATPLPPVPPP 1608

Query: 435  WVVALPQVKQEKADTQDEWTPGTAVLTSPVLV-------PGCPSKAVD-PGLPSVKQEPP 486
             V A P      A +   +    A LT            PG P+ A   P  P    +PP
Sbjct: 1609 AVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPDPP 1668

Query: 487  DPEEDKEENKDDSASKLAPEEEAGGAGT 514
               +   E  D  +S   P E    A T
Sbjct: 1669 PGTDSGIEEVDSRSSSDHPLETISSAST 1696



 Score = 35.4 bits (80), Expect = 0.14
 Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 32/134 (23%)

Query: 284  PGAQPLPPPPPSQSPEP---TEPHPRA---LAPSPPAEFIYYCVDEDELKRLLPSVWSES 337
            PG++ +PPPP +  PEP   T P P +   L PSP                 LP+    S
Sbjct: 915  PGSEDIPPPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPF-----NPGSGGPLPASSPAS 969

Query: 338  EDGAGSPPPYRRRKRPSSA---------------RRHHLGPTLKPTLATRTAQPDHTQAP 382
             DG  SPP  R   R  S                  HH  P  +P      A P H   P
Sbjct: 970  FDGP-SPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQP--HHHHAHPPH---P 1023

Query: 383  TKQEAGGGFVLPPP 396
             + E GG    PPP
Sbjct: 1024 PEMETGGSPDDPPP 1037



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 54/239 (22%), Positives = 74/239 (30%), Gaps = 54/239 (22%)

Query: 284  PGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLL---PSVWSESEDG 340
            P   P PP P  ++P PT  H    A   P   ++     D  +R L     + S+ +  
Sbjct: 1374 PQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSL 1433

Query: 341  AGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDL 400
              SPP  RR      +  H L PT                               PG   
Sbjct: 1434 PASPPAARR------SLLHRLPPT------------------------------APGVGP 1457

Query: 401  VFLREGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGTAVL 460
            + L+ G   P   PG       A  +E +   L  V  L   +     T     P     
Sbjct: 1458 LLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLH-VRFLENCQPRAPVTSGRGPPSE--- 1513

Query: 461  TSPVLVPGCPSKAVDP-----------GLPSVKQEPPDPEEDKEENKDDSASKLAPEEE 508
              P + P  P ++V P           GLP +   PP P  D E+ +      L P  E
Sbjct: 1514 DGPGVPPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDVEDGEFLFVEPLPPPLE 1572


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
            sapiens]
          Length = 1362

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 53/241 (21%), Positives = 86/241 (35%), Gaps = 39/241 (16%)

Query: 287  QPLPPPPPSQSPEPTEPH--PRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGSP 344
            QP PPPPP   P P + H  P       P +F  +           P          G  
Sbjct: 973  QPPPPPPPQPQPPPQQQHQPPPRPVHLQPMQFSTHIQQPPP-----PQGQQPPHPPPGQQ 1027

Query: 345  PPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLR 404
            PP  +  +P    +HH  P        R  + D       +EA    ++  P        
Sbjct: 1028 PPPPQPAKPQQVIQHHHSP--------RHHKSDPYSTGHLREAPSPLMIHSPQMSQFQSL 1079

Query: 405  EGASSPVQVPGPVAASTEALLQEAQCSGLSWVVALPQVKQEKADT----QDEWTPG---- 456
               S P Q       + +   QE + + +     L  VK+EK  +     + ++P     
Sbjct: 1080 THQSPPQQ-------NVQPKKQELRAASVVQPQPLVVVKEEKIHSPIIRSEPFSPSLRPE 1132

Query: 457  ----TAVLTSPVLVPGCPS-KAVDPGLPSVK----QEPPDPEEDKEENKDDSASKLAPEE 507
                   + +PV +P  P  K VD G P ++      PP    DK++ K +  + +AP++
Sbjct: 1133 PPKHPESIKAPVHLPQRPEMKPVDVGRPVIRPPEQNAPPPGAPDKDKQKQEPKTPVAPKK 1192

Query: 508  E 508
            +
Sbjct: 1193 D 1193



 Score = 35.4 bits (80), Expect = 0.14
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 284 PGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDGAGS 343
           P   P P PPP+ +P+P + HP  +A +P          +  +KR   +    + D    
Sbjct: 251 PPVPPQPQPPPAPAPQPVQSHPPIIAATPQP-----VKTKKGVKRKADTTTPTTIDPIHE 305

Query: 344 PPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEA 387
           PP       P + +      + +P    +   PD  Q P  +++
Sbjct: 306 PPSL--PPEPKTTKLGQRRESSRPVKPPKKDVPDSQQHPAPEKS 347



 Score = 34.3 bits (77), Expect = 0.30
 Identities = 53/233 (22%), Positives = 81/233 (34%), Gaps = 43/233 (18%)

Query: 284 PGAQPLPPPPPSQSPEPTEPHP---------RALAPSPPAEFIYYCVDEDELKRLLPSVW 334
           P  QP PPPPP Q  +P  P P          A+  SPP    +       L+  LP   
Sbjct: 760 PPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPP---FIATQVPVLEPQLPGSV 816

Query: 335 SESEDGAGSP---------PPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQ 385
            +       P         PP+  +    S   H     +    A   A P     P+ +
Sbjct: 817 FDPIGHFTQPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNR 876

Query: 386 EAGGGFVLPP-PGTDLVFLREGASSPVQVPGPVAASTEALLQEAQ-----CSGLSWVVAL 439
            A     LPP P            +P+    P+A   + LL++ +      + +   + L
Sbjct: 877 AA----ALPPKPARPPAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYL 932

Query: 440 PQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSV----KQEPPDP 488
            Q+++ +        P T +L S  +    P     P  PSV    +Q+PP P
Sbjct: 933 QQLQKVQ--------PPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPP 977



 Score = 33.9 bits (76), Expect = 0.40
 Identities = 52/218 (23%), Positives = 69/218 (31%), Gaps = 53/218 (24%)

Query: 281 RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKRLLPSVWSESEDG 340
           ++ P   P  PPPP Q P P  P  +   P PP                           
Sbjct: 747 QQAPAPVPQQPPPPPQQPPPPPPPQQQQQPPPP--------------------------- 779

Query: 341 AGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPG--T 398
              PPP    ++ + A +    P +             TQ P  +    G V  P G  T
Sbjct: 780 ---PPPPSMPQQAAPAMKSSPPPFIA------------TQVPVLEPQLPGSVFDPIGHFT 824

Query: 399 DLVFLREGASSPVQVPGPVAASTEA-LLQEAQCSGLSWVVALPQVKQEKADTQDEWTPGT 457
             +        P  +P P   ST   L Q A  S  +   ALPQ     ++      P  
Sbjct: 825 QPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKP 884

Query: 458 A-------VLTSPVLVPGCPSKAVDPGLPSVKQEPPDP 488
           A        LT   L+P  P  A  P +    +EPP P
Sbjct: 885 ARPPAVSPALTQTPLLPQ-PPMAQPPQVLLEDEEPPAP 921


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 31/78 (39%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 270 RKGGCD-SKMAARRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELKR 328
           R+  C   + AA R PG  P PPPPP   P P    PRA AP PPA              
Sbjct: 56  RRAACTVQRYAACRDPGPPP-PPPPPPPPPPPPGLSPRAPAP-PPA------------GA 101

Query: 329 LLPSVWSESEDGAGSPPP 346
           LLP      E  + SPPP
Sbjct: 102 LLPEPGQRCEAVSSSPPP 119


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,548,324
Number of Sequences: 37866
Number of extensions: 1926228
Number of successful extensions: 23790
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 661
Number of HSP's that attempted gapping in prelim test: 16168
Number of HSP's gapped (non-prelim): 5977
length of query: 549
length of database: 18,247,518
effective HSP length: 107
effective length of query: 442
effective length of database: 14,195,856
effective search space: 6274568352
effective search space used: 6274568352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.