MBD1 13238

Name: MBD1	Sequence: fasta or formatted (586aa)		NCBI GI: 21464115
Description: methyl-CpG binding domain protein 1 isoform 2		Referenced in: DNA Methylation Fibroblast Growth Factors
Other entries for this name: alt prot [549aa] methyl-CpG binding domain protein 1 isoform 3 alt prot [605aa] methyl-CpG binding domain protein 1 isoform 1 alt prot [556aa] methyl-CpG binding domain protein 1 isoform PCM1 alt prot [503aa] methyl-CpG binding domain protein 1 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.7 45 2 C cysteine 6.7 39 2 D aspartate 4.9 29 2 E glutamate 5.6 33 3 F phenylalanine 2.6 15 1 G glycine 8.5 50 3 H histidine 1.5 9 2 I isoleucine 1.4 8 1 K lysine 6.0 35 2 L leucine 6.1 36 2 M methionine 1.2 7 2 N asparagine 1.2 7 1 P proline 10.4 61 5 Q glutamine 5.1 30 1 R arginine 10.9 64 3 S serine 7.2 42 2 T threonine 5.6 33 1 V valine 4.4 26 1 W tryptophan 1.9 11 1 Y tyrosine 1.0 6 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 methyl-CpG binding domain protein 1 isoform 2 MBD1 0.857 methyl-CpG binding domain protein 1 isoform 1 MBD1 0.768 methyl-CpG binding domain protein 1 isoform 4 MBD1 0.751 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... MBD1 0.750 methyl-CpG binding domain protein 1 isoform 3 [Homo... MBD2 0.049 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.049 methyl-CpG binding domain protein 2 isoform 1 MLL 0.047 myeloid/lymphoid or mixed-lineage leukemia protein [... CXXC1 0.041 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.041 CXXC finger 1 (PHD domain) isoform 2 MBD3 0.040 methyl-CpG binding domain protein 3 MLL4 0.036 myeloid/lymphoid or mixed-lineage leukemia 4 DNMT1 0.024 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... DNMT1 0.024 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... KDM2B 0.024 F-box and leucine-rich repeat protein 10 isoform a [... KDM2B 0.024 F-box and leucine-rich repeat protein 10 isoform b [... FBXL19 0.024 F-box and leucine-rich repeat protein 19 MECP2 0.024 methyl CpG binding protein 2 isoform 2 MECP2 0.024 methyl CpG binding protein 2 isoform 1 KDM2A 0.021 F-box and leucine-rich repeat protein 11 TET1 0.014 CXXC finger 6 SPRED3 0.013 sprouty-related, EVH1 domain containing 3 isoform a... LOC100289743 0.012 PREDICTED: hypothetical protein XP_002348163 RPH3A 0.012 rabphilin 3A homolog isoform 1 RPH3A 0.012 rabphilin 3A homolog isoform 2 DMRT2 0.012 doublesex and mab-3 related transcription factor 2 ... LOC100293922 0.012 PREDICTED: hypothetical protein LOC100291358 0.012 PREDICTED: hypothetical protein XP_002347390 CXXC5 0.012 CXXC finger 5 MBD4 0.011 methyl-CpG binding domain protein 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.