MBD1 13239

Name: MBD1	Sequence: fasta or formatted (605aa)		NCBI GI: 21464117
Description: methyl-CpG binding domain protein 1 isoform 1		Referenced in: DNA Methylation Fibroblast Growth Factors
Other entries for this name: alt prot [549aa] methyl-CpG binding domain protein 1 isoform 3 alt prot [586aa] methyl-CpG binding domain protein 1 isoform 2 alt prot [556aa] methyl-CpG binding domain protein 1 isoform PCM1 alt prot [503aa] methyl-CpG binding domain protein 1 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 52 2 C cysteine 6.4 39 2 D aspartate 5.3 32 2 E glutamate 5.8 35 3 F phenylalanine 2.6 16 1 G glycine 8.1 49 3 H histidine 1.3 8 2 I isoleucine 1.5 9 1 K lysine 6.8 41 2 L leucine 6.8 41 2 M methionine 0.8 5 1 N asparagine 1.0 6 1 P proline 10.6 64 5 Q glutamine 5.5 33 1 R arginine 10.2 62 3 S serine 6.0 36 2 T threonine 5.3 32 1 V valine 4.8 29 2 W tryptophan 1.3 8 1 Y tyrosine 1.3 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 methyl-CpG binding domain protein 1 isoform 1 MBD1 0.896 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... MBD1 0.868 methyl-CpG binding domain protein 1 isoform 3 [Homo... MBD1 0.823 methyl-CpG binding domain protein 1 isoform 2 MBD1 0.761 methyl-CpG binding domain protein 1 isoform 4 MBD2 0.048 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.048 methyl-CpG binding domain protein 2 isoform 1 MLL 0.044 myeloid/lymphoid or mixed-lineage leukemia protein [... CXXC1 0.043 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.043 CXXC finger 1 (PHD domain) isoform 2 MBD3 0.039 methyl-CpG binding domain protein 3 MLL4 0.033 myeloid/lymphoid or mixed-lineage leukemia 4 DNMT1 0.027 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... DNMT1 0.027 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... KDM2B 0.024 F-box and leucine-rich repeat protein 10 isoform a [... KDM2B 0.024 F-box and leucine-rich repeat protein 10 isoform b [... MECP2 0.023 methyl CpG binding protein 2 isoform 2 MECP2 0.023 methyl CpG binding protein 2 isoform 1 FBXL19 0.021 F-box and leucine-rich repeat protein 19 KDM2A 0.021 F-box and leucine-rich repeat protein 11 ESPN 0.013 espin TET1 0.013 CXXC finger 6 SETD1B 0.013 SET domain containing 1B LOC100132891 0.012 PREDICTED: hypothetical protein LOC100132891 0.012 PREDICTED: hypothetical protein LOC100132891 0.012 PREDICTED: hypothetical protein CXXC5 0.012 CXXC finger 5 MBD4 0.011 methyl-CpG binding domain protein 4 PRR12 0.011 proline rich 12 EP400 0.011 E1A binding protein p400 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.