Guide to the Human Genome
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Name: C1orf127 Sequence: fasta or formatted (656aa) NCBI GI: 27735129
Description:

hypothetical protein LOC148345

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         58           2
 C cysteine            0.8          5           1
 D aspartate           2.4         16           1
 E glutamate           7.8         51           2
 F phenylalanine       1.8         12           2
 G glycine             8.2         54           2
 H histidine           1.5         10           1
 I isoleucine          1.5         10           1
 K lysine              1.2          8           2
 L leucine            11.1         73           3
 M methionine          1.7         11           1
 N asparagine          0.6          4           1
 P proline            14.2         93           3
 Q glutamine           5.8         38           2
 R arginine            6.7         44           2
 S serine             10.4         68           3
 T threonine           5.6         37           2
 V valine              7.2         47           3
 W tryptophan          1.8         12           1
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC148345 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.033   myeloid/lymphoid or mixed-lineage leukemia 2 
PRG4                  0.032   proteoglycan 4 isoform D 
PRG4                  0.032   proteoglycan 4 isoform C 
PRG4                  0.032   proteoglycan 4 isoform B 
PRG4                  0.032   proteoglycan 4 isoform A 
KIAA0754              0.032   hypothetical protein LOC643314 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
RAPH1                 0.031   Ras association and pleckstrin homology domains 1 is...
GLTSCR1               0.028   glioma tumor suppressor candidate region gene 1 [Ho...
TAF4                  0.028   TBP-associated factor 4 
WNK2                  0.028   WNK lysine deficient protein kinase 2 
MLL4                  0.028   myeloid/lymphoid or mixed-lineage leukemia 4 
MUC2                  0.026   mucin 2 precursor 
SALL3                 0.026   sal-like 3 
C2orf55               0.026   hypothetical protein LOC343990 
ZNF828                0.026   zinc finger protein 828 
WIPF3                 0.026   WAS/WASL interacting protein family, member 3 [Homo...
SRCAP                 0.025   Snf2-related CBP activator protein 
LOC284297             0.023   hypothetical protein LOC284297 
CASKIN2               0.022   cask-interacting protein 2 isoform b 
CASKIN2               0.022   cask-interacting protein 2 isoform a 
C15orf42              0.022   leucine-rich repeat kinase 1 
SH3BP1                0.022   SH3-domain binding protein 1 
SYN1                  0.022   synapsin I isoform Ia 
TTN                   0.022   titin isoform N2-A 
CIC                   0.022   capicua homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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