Guide to the Human Genome
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Name: CXXC1 Sequence: fasta or formatted (660aa) NCBI GI: 156142182
Description:

CXXC finger 1 (PHD domain) isoform 1

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins

Other entries for this name:
alt prot [656aa] CXXC finger 1 (PHD domain) isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         40           2
 C cysteine            5.0         33           1
 D aspartate           7.0         46           2
 E glutamate           8.9         59           2
 F phenylalanine       2.3         15           1
 G glycine             5.2         34           3
 H histidine           2.9         19           2
 I isoleucine          3.3         22           2
 K lysine              7.0         46           2
 L leucine             6.7         44           2
 M methionine          2.1         14           1
 N asparagine          2.1         14           1
 P proline             7.7         51           2
 Q glutamine           6.1         40           6
 R arginine           10.9         72           2
 S serine              6.4         42           2
 T threonine           3.3         22           2
 V valine              3.6         24           1
 W tryptophan          1.1          7           1
 Y tyrosine            2.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.990   CXXC finger 1 (PHD domain) isoform 2 
MBD1                  0.040   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.040   methyl-CpG binding domain protein 1 isoform 1 
MBD1                  0.037   methyl-CpG binding domain protein 1 isoform 2 
FBXL19                0.031   F-box and leucine-rich repeat protein 19 
KDM2B                 0.031   F-box and leucine-rich repeat protein 10 isoform a [...
KDM2B                 0.031   F-box and leucine-rich repeat protein 10 isoform b [...
DIDO1                 0.030   death inducer-obliterator 1 isoform c 
DIDO1                 0.030   death inducer-obliterator 1 isoform b 
DIDO1                 0.030   death inducer-obliterator 1 isoform a 
DIDO1                 0.030   death inducer-obliterator 1 isoform a 
PHF2                  0.029   PHD finger protein 2 
JHDM1D                0.029   jumonji C domain containing histone demethylase 1 ho...
MLL                   0.028   myeloid/lymphoid or mixed-lineage leukemia protein [...
PHF8                  0.027   PHD finger protein 8 
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
KDM2A                 0.026   F-box and leucine-rich repeat protein 11 
MLL4                  0.024   myeloid/lymphoid or mixed-lineage leukemia 4 
PHF3                  0.023   PHD finger protein 3 
DNMT1                 0.020   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.020   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
TAF3                  0.020   RNA polymerase II transcription factor TAFII140 [Ho...
ING1                  0.019   inhibitor of growth family, member 1 isoform A [Homo...
ING1                  0.019   inhibitor of growth family, member 1 isoform B [Homo...
ING1                  0.019   inhibitor of growth family, member 1 isoform C [Homo...
ING1                  0.019   inhibitor of growth family, member 1 isoform D [Homo...
ING2                  0.018   inhibitor of growth family, member 2 
TET1                  0.018   CXXC finger 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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