Guide to the Human Genome
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Name: RERE Sequence: fasta or formatted (1566aa) NCBI GI: 112382216
Description:

atrophin-1 like protein isoform a

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt mRNA [1566aa] atrophin-1 like protein isoform a
alt prot [1012aa] atrophin-1 like protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        129           3
 C cysteine            1.3         20           2
 D aspartate           5.1         80           2
 E glutamate           6.9        108           2
 F phenylalanine       2.3         36           2
 G glycine             5.4         84           2
 H histidine           4.7         74           3
 I isoleucine          2.6         40           1
 K lysine              5.0         79           3
 L leucine             7.2        113           2
 M methionine          1.8         28           1
 N asparagine          2.7         43           2
 P proline            14.4        225           5
 Q glutamine           5.2         81           3
 R arginine            6.9        108           2
 S serine              9.5        148           3
 T threonine           5.2         82           3
 V valine              3.0         47           2
 W tryptophan          0.4          6           1
 Y tyrosine            2.2         35           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   atrophin-1 like protein isoform a 
RERE                  1.000   atrophin-1 like protein isoform a 
RERE                  0.644   atrophin-1 like protein isoform b 
ATN1                  0.211   atrophin-1 
ATN1                  0.211   atrophin-1 
MTA3                  0.042   metastasis associated 1 family, member 3 
MTA2                  0.041   metastasis-associated protein 2 
MTA1                  0.040   metastasis associated protein 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
BRD4                  0.038   bromodomain-containing protein 4 isoform long 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
RAPH1                 0.034   Ras association and pleckstrin homology domains 1 is...
PRG4                  0.033   proteoglycan 4 isoform B 
FMN2                  0.033   formin 2 
PRG4                  0.033   proteoglycan 4 isoform A 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
LOC646396             0.033   PREDICTED: similar to hCG2042704 
PRG4                  0.032   proteoglycan 4 isoform D 
PRG4                  0.032   proteoglycan 4 isoform C 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
MLL2                  0.030   myeloid/lymphoid or mixed-lineage leukemia 2 
SF1                   0.028   splicing factor 1 isoform 1 
MUC2                  0.028   mucin 2 precursor 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 1 pre...
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 
CCNK                  0.027   cyclin K isoform 1 
GLTSCR1               0.026   glioma tumor suppressor candidate region gene 1 [Ho...
KIAA1522              0.026   hypothetical protein LOC57648 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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