MBD1 13240

Name: MBD1	Sequence: fasta or formatted (556aa)		NCBI GI: 21464119
Description: methyl-CpG binding domain protein 1 isoform PCM1		Referenced in: DNA Methylation Fibroblast Growth Factors
Other entries for this name: alt prot [549aa] methyl-CpG binding domain protein 1 isoform 3 alt prot [586aa] methyl-CpG binding domain protein 1 isoform 2 alt prot [605aa] methyl-CpG binding domain protein 1 isoform 1 alt prot [503aa] methyl-CpG binding domain protein 1 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 48 2 C cysteine 5.4 30 2 D aspartate 5.4 30 2 E glutamate 5.6 31 3 F phenylalanine 2.7 15 1 G glycine 8.1 45 3 H histidine 1.3 7 2 I isoleucine 1.4 8 1 K lysine 7.2 40 2 L leucine 6.5 36 2 M methionine 0.9 5 1 N asparagine 1.1 6 1 P proline 11.3 63 5 Q glutamine 5.6 31 1 R arginine 10.1 56 3 S serine 6.1 34 2 T threonine 5.4 30 1 V valine 4.5 25 2 W tryptophan 1.4 8 1 Y tyrosine 1.4 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... MBD1 0.980 methyl-CpG binding domain protein 1 isoform 1 MBD1 0.836 methyl-CpG binding domain protein 1 isoform 3 [Homo... MBD1 0.788 methyl-CpG binding domain protein 1 isoform 2 MBD1 0.720 methyl-CpG binding domain protein 1 isoform 4 MBD2 0.053 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.053 methyl-CpG binding domain protein 2 isoform 1 MLL 0.048 myeloid/lymphoid or mixed-lineage leukemia protein [... CXXC1 0.047 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.047 CXXC finger 1 (PHD domain) isoform 2 MBD3 0.042 methyl-CpG binding domain protein 3 MLL4 0.036 myeloid/lymphoid or mixed-lineage leukemia 4 DNMT1 0.029 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... DNMT1 0.029 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... KDM2B 0.026 F-box and leucine-rich repeat protein 10 isoform a [... KDM2B 0.026 F-box and leucine-rich repeat protein 10 isoform b [... MECP2 0.025 methyl CpG binding protein 2 isoform 2 MECP2 0.025 methyl CpG binding protein 2 isoform 1 FBXL19 0.023 F-box and leucine-rich repeat protein 19 KDM2A 0.023 F-box and leucine-rich repeat protein 11 ESPN 0.015 espin ZNF579 0.015 zinc finger protein 579 TET1 0.015 CXXC finger 6 SETD1B 0.015 SET domain containing 1B CXXC5 0.013 CXXC finger 5 SRRM2 0.013 splicing coactivator subunit SRm300 MBD4 0.012 methyl-CpG binding domain protein 4 PRR12 0.012 proline rich 12 EP400 0.012 E1A binding protein p400 LOC646862 0.011 PREDICTED: hypothetical protein LOC646862 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.