MBD1 5836

Name: MBD1	Sequence: fasta or formatted (549aa)		NCBI GI: 156105673
Description: methyl-CpG binding domain protein 1 isoform 3		Referenced in: DNA Methylation Fibroblast Growth Factors
Other entries for this name: alt prot [586aa] methyl-CpG binding domain protein 1 isoform 2 alt prot [605aa] methyl-CpG binding domain protein 1 isoform 1 alt prot [556aa] methyl-CpG binding domain protein 1 isoform PCM1 alt prot [503aa] methyl-CpG binding domain protein 1 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 48 2 C cysteine 5.5 30 2 D aspartate 5.3 29 2 E glutamate 6.4 35 3 F phenylalanine 2.4 13 1 G glycine 8.2 45 3 H histidine 1.5 8 2 I isoleucine 1.6 9 1 K lysine 6.6 36 2 L leucine 7.1 39 2 M methionine 0.5 3 1 N asparagine 0.5 3 1 P proline 11.3 62 5 Q glutamine 4.9 27 1 R arginine 9.7 53 3 S serine 6.4 35 2 T threonine 5.6 31 1 V valine 5.3 29 2 W tryptophan 1.3 7 1 Y tyrosine 1.3 7 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 methyl-CpG binding domain protein 1 isoform 3 [Homo... MBD1 0.966 methyl-CpG binding domain protein 1 isoform 1 MBD1 0.882 methyl-CpG binding domain protein 1 isoform 4 MBD1 0.851 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... MBD1 0.802 methyl-CpG binding domain protein 1 isoform 2 MBD2 0.054 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.054 methyl-CpG binding domain protein 2 isoform 1 MBD3 0.043 methyl-CpG binding domain protein 3 MLL4 0.026 myeloid/lymphoid or mixed-lineage leukemia 4 MECP2 0.026 methyl CpG binding protein 2 isoform 2 MECP2 0.026 methyl CpG binding protein 2 isoform 1 MLL 0.023 myeloid/lymphoid or mixed-lineage leukemia protein [... C1orf127 0.022 hypothetical protein LOC148345 FGD1 0.019 faciogenital dysplasia protein VGF 0.019 VGF nerve growth factor inducible precursor CXXC1 0.019 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.019 CXXC finger 1 (PHD domain) isoform 2 FBXL19 0.018 F-box and leucine-rich repeat protein 19 C11orf9 0.017 hypothetical protein LOC745 isoform 1 C11orf9 0.017 hypothetical protein LOC745 isoform 2 SRRM1 0.017 serine/arginine repetitive matrix 1 NACA 0.017 nascent polypeptide-associated complex alpha subuni... KDM6B 0.016 lysine (K)-specific demethylase 6B RERE 0.016 atrophin-1 like protein isoform b RERE 0.016 atrophin-1 like protein isoform a RERE 0.016 atrophin-1 like protein isoform a WASF3 0.015 WAS protein family, member 3 SHANK1 0.015 SH3 and multiple ankyrin repeat domains 1 BRD4 0.015 bromodomain-containing protein 4 isoform long HOXB4 0.015 homeobox B4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.