MBD1 36239

Name: MBD1	Sequence: fasta or formatted (503aa)		NCBI GI: 7710143
Description: methyl-CpG binding domain protein 1 isoform 4		Referenced in: DNA Methylation Fibroblast Growth Factors
Other entries for this name: alt prot [549aa] methyl-CpG binding domain protein 1 isoform 3 alt prot [586aa] methyl-CpG binding domain protein 1 isoform 2 alt prot [605aa] methyl-CpG binding domain protein 1 isoform 1 alt prot [556aa] methyl-CpG binding domain protein 1 isoform PCM1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 44 2 C cysteine 5.6 28 2 D aspartate 5.4 27 2 E glutamate 6.4 32 3 F phenylalanine 2.6 13 1 G glycine 8.3 42 3 H histidine 1.6 8 2 I isoleucine 1.8 9 1 K lysine 6.6 33 2 L leucine 7.0 35 2 M methionine 0.6 3 1 N asparagine 0.6 3 1 P proline 11.3 57 5 Q glutamine 4.6 23 1 R arginine 10.5 53 3 S serine 6.2 31 2 T threonine 5.4 27 1 V valine 4.6 23 1 W tryptophan 1.0 5 1 Y tyrosine 1.4 7 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 methyl-CpG binding domain protein 1 isoform 4 MBD1 0.979 methyl-CpG binding domain protein 1 isoform 3 [Homo... MBD1 0.942 methyl-CpG binding domain protein 1 isoform 1 MBD1 0.912 methyl-CpG binding domain protein 1 isoform 2 MBD1 0.816 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... MBD2 0.059 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.059 methyl-CpG binding domain protein 2 isoform 1 MBD3 0.047 methyl-CpG binding domain protein 3 MLL 0.031 myeloid/lymphoid or mixed-lineage leukemia protein [... MLL4 0.028 myeloid/lymphoid or mixed-lineage leukemia 4 MECP2 0.028 methyl CpG binding protein 2 isoform 2 MECP2 0.028 methyl CpG binding protein 2 isoform 1 C1orf127 0.021 hypothetical protein LOC148345 VGF 0.021 VGF nerve growth factor inducible precursor CXXC1 0.020 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.020 CXXC finger 1 (PHD domain) isoform 2 FBXL19 0.020 F-box and leucine-rich repeat protein 19 WASF3 0.020 WAS protein family, member 3 C11orf9 0.019 hypothetical protein LOC745 isoform 1 C11orf9 0.019 hypothetical protein LOC745 isoform 2 DTX1 0.019 deltex homolog 1 KDM6B 0.018 lysine (K)-specific demethylase 6B PRR12 0.018 proline rich 12 RAPH1 0.018 Ras association and pleckstrin homology domains 1 is... LMTK3 0.018 lemur tyrosine kinase 3 RPH3A 0.017 rabphilin 3A homolog isoform 1 RPH3A 0.017 rabphilin 3A homolog isoform 2 WIPF3 0.017 WAS/WASL interacting protein family, member 3 [Homo... NOLC1 0.017 nucleolar and coiled-body phosphoprotein 1 PCLO 0.017 piccolo isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.