Guide to the Human Genome
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Name: C11orf9 Sequence: fasta or formatted (1151aa) NCBI GI: 188528652
Description:

hypothetical protein LOC745 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1111aa} hypothetical protein LOC745 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         78           2
 C cysteine            1.7         19           2
 D aspartate           3.6         42           2
 E glutamate           4.9         56           2
 F phenylalanine       2.9         33           2
 G glycine             7.2         83           3
 H histidine           4.1         47           2
 I isoleucine          3.2         37           2
 K lysine              4.2         48           2
 L leucine             9.4        108           3
 M methionine          2.0         23           1
 N asparagine          3.6         42           4
 P proline            11.5        132           9
 Q glutamine           5.2         60           2
 R arginine            4.1         47           2
 S serine             10.5        121           3
 T threonine           5.9         68           2
 V valine              6.2         71           3
 W tryptophan          0.9         10           1
 Y tyrosine            2.3         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC745 isoform 2 
C11orf9               0.951   hypothetical protein LOC745 isoform 1 
C12orf28              0.229   PREDICTED: chromosome 12 open reading frame 28 [Hom...
C12orf28              0.229   PREDICTED: hypothetical protein LOC196446 
C12orf28              0.220   PREDICTED: hypothetical protein LOC196446 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
PRB2                  0.018   proline-rich protein BstNI subfamily 2 
PRB1                  0.017   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SF1                   0.017   splicing factor 1 isoform 1 
WIPF1                 0.017   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.017   WAS/WASL interacting protein family, member 1 
YLPM1                 0.017   YLP motif containing 1 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
SMARCA2               0.015   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.015   SWI/SNF-related matrix-associated actin-dependent re...
FMN2                  0.015   formin 2 
PRB3                  0.015   proline-rich protein BstNI subfamily 3 precursor [H...
WASL                  0.015   Wiskott-Aldrich syndrome gene-like protein 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
SF1                   0.015   splicing factor 1 isoform 2 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
SF3B4                 0.015   splicing factor 3b, subunit 4 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
WIPF2                 0.014   WIRE protein 
PRR12                 0.014   proline rich 12 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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