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Search of human proteins with 154146231
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154146231 DMRT-like family A2 [Homo sapiens]
(542 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154146231 DMRT-like family A2 [Homo sapiens] 1087 0.0
gi|170763515 DMRT-like family A1 [Homo sapiens] 275 8e-74
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 149 8e-36
gi|62241026 doublesex and mab-3 related transcription factor 1 [... 124 2e-28
gi|195947401 doublesex and mab-3 related transcription factor 2 ... 117 3e-26
gi|5729806 doublesex and mab-3 related transcription factor 2 is... 117 3e-26
gi|153945850 doublesex and mab-3 related transcription factor 2 ... 117 3e-26
gi|24308352 DMRT-like family B with proline-rich C-terminal, 1 [... 100 6e-21
gi|94536830 DMRT-like family C2 [Homo sapiens] 86 1e-16
gi|110832843 TBP-associated factor 4 [Homo sapiens] 76 7e-14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 72 2e-12
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 68 2e-11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 65 2e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 65 2e-10
gi|153070260 myristoylated alanine-rich protein kinase C substra... 65 2e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 62 1e-09
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 62 1e-09
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 62 1e-09
gi|126352446 elastin isoform d precursor [Homo sapiens] 60 4e-09
gi|126352322 elastin isoform c precursor [Homo sapiens] 60 4e-09
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 60 7e-09
gi|24432032 zinc finger protein 503 [Homo sapiens] 59 9e-09
gi|119395716 forkhead box C1 [Homo sapiens] 59 1e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 59 1e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 57 3e-08
gi|126352608 elastin isoform e precursor [Homo sapiens] 56 1e-07
gi|126352440 elastin isoform a precursor [Homo sapiens] 56 1e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 56 1e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 56 1e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 55 1e-07
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 1087 bits (2810), Expect = 0.0
Identities = 542/542 (100%), Positives = 542/542 (100%)
Query: 1 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA 60
MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA
Sbjct: 1 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA 60
Query: 61 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA 120
AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA
Sbjct: 61 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA 120
Query: 121 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 180
QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA
Sbjct: 121 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 180
Query: 181 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE 240
AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE
Sbjct: 181 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE 240
Query: 241 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA 300
NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA
Sbjct: 241 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA 300
Query: 301 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA 360
PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA
Sbjct: 301 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA 360
Query: 361 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL 420
GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL
Sbjct: 361 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL 420
Query: 421 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL 480
AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL
Sbjct: 421 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL 480
Query: 481 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE 540
AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE
Sbjct: 481 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE 540
Query: 541 KQ 542
KQ
Sbjct: 541 KQ 542
>gi|170763515 DMRT-like family A1 [Homo sapiens]
Length = 504
Score = 275 bits (703), Expect = 8e-74
Identities = 207/520 (39%), Positives = 261/520 (50%), Gaps = 79/520 (15%)
Query: 8 PSVPGAATAAAATATGPPV----ASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEK 63
P P A + PP S+ AAAAAAAA+ S +GG P L
Sbjct: 28 PPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGAV 87
Query: 64 ---YPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA 120
YPRTPKCARCRNHGVVSALKGHKR+CRW+DC CAKCTLIAERQRVMAAQVALRRQQA
Sbjct: 88 GCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQA 147
Query: 121 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 180
QEE+EAR LQ L GL+ PP A GGG A P TGG A
Sbjct: 148 QEESEARGLQRLL--CSGLSW-------PPGGR---------ASGGGGRAENPQSTGGPA 189
Query: 181 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSP-DGADSGPG---TSSPEVRPG 236
AGA L++ + + P + S + +G + S ++ G
Sbjct: 190 AGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQEELISKSHQLYLG 249
Query: 237 SGSENGD--GESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADK 294
S S + G+ GS ++ S + G GGEE SP S S ESG+E++
Sbjct: 250 SSSRSNGVIGKQSIGSSISEYSNKPDSILSPHPGEQSGGEE-SPRSLSSSDLESGNESEW 308
Query: 295 EEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHH 354
+ A L S R R PLDILT++FP +RR LE +L+ C GDVVQAIEQVLN
Sbjct: 309 VKDLTATKASLPTVSS-RPRDPLDILTKIFPNYRRSRLEGILRFCKGDVVQAIEQVLN-- 365
Query: 355 RGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPP 414
G PD + + ++ R + + A
Sbjct: 366 --------GKEHKPDNRNLANSEELENTAFQRASSFSLAGI------------------- 398
Query: 415 HHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAA 474
G+L ++SAFSPLQ ++ +G D+ Y + +G+SPLRLAYS+A
Sbjct: 399 -------------GFGTLGNKSAFSPLQTTSASYGGDSSLYGVNPRVGISPLRLAYSSA- 444
Query: 475 AHSRGLA-FMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRS 513
RGL+ FM+PY T GLVPTL FRP +DYAFS ++RD S
Sbjct: 445 --GRGLSGFMSPYLTPGLVPTLPFRPALDYAFSGMIRDSS 482
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 149 bits (375), Expect = 8e-36
Identities = 141/429 (32%), Positives = 181/429 (42%), Gaps = 84/429 (19%)
Query: 50 LLRGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVM 109
L G P+ RTPKCARCRNHGV+S LKGHKRYCR+KDC C KC LI ERQRVM
Sbjct: 9 LYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQRVM 68
Query: 110 AAQVALRRQQAQEENEA---RELQLLYG-TAEGLALAA--------ANGIIPPRPAYEVF 157
AAQVALRRQQA E E+ L+ L G G A+AA + PPRPA E+
Sbjct: 69 AAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAEL- 127
Query: 158 GSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPL 217
A A A G +A+L K DL + L + +
Sbjct: 128 ------------AAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADN-----TEVF 170
Query: 218 SPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDS 277
S D SSP+V G F+ S E GG + GG E
Sbjct: 171 SDKDTDQ---RSSPDVAKSKG-------CFTPESPEIVSVEEGGY---AVQKNGGNPESR 217
Query: 278 PGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQ 337
P S ++ + G + L R PL++L ++FP + VLEL+L+
Sbjct: 218 PDSPKCHAEQNHLLIEGPSGTVSLPFSL-----KANRPPLEVLKKIFPNQKPTVLELILK 272
Query: 338 GCGGDVVQAIEQVLNHHRGGLAAGLGPAAP----------------------PDKAAVGA 375
GCGGD+V A+E +L+ A A P K +VG+
Sbjct: 273 GCGGDLVSAVEVLLSSRSSVTGAERTSAEPESLALPSNGHIFEHTLSSYPISSSKWSVGS 332
Query: 376 AAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSR 435
A D D++ +P+PL AGP PP +P P L + +R
Sbjct: 333 AFRVPDTLRFSADSSNV---------VPSPL-AGPLQPPFPQP----PRYPLMLRNTLAR 378
Query: 436 SAFSPLQPN 444
S SP PN
Sbjct: 379 SQSSPFLPN 387
>gi|62241026 doublesex and mab-3 related transcription factor 1
[Homo sapiens]
Length = 373
Score = 124 bits (312), Expect = 2e-28
Identities = 65/119 (54%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 5 SELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKY 64
SE P PG A G ++ A+ ++A S S GG G L ++K
Sbjct: 14 SEAPHAPGVPPQGRAGGFGKASGALVGAASGSSAGGS---SRGGGSGSGASDLGAGSKKS 70
Query: 65 PRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEE 123
PR PKCARCRNHG S LKGHKR+C W+DC C KC LIAERQRVMAAQVALRRQQAQEE
Sbjct: 71 PRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEE 129
>gi|195947401 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 117 bits (293), Expect = 3e-26
Identities = 62/118 (52%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 8 PSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRT 67
P +PG PP+A AS A P AGG K RT
Sbjct: 72 PGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTP---AGGGAE--------PRKLSRT 120
Query: 68 PKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
PKCARCRNHGVVS LKGHKR+CRW+DC CA C L+ ERQRVMAAQVALRRQQA E+ +
Sbjct: 121 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKK 178
Score = 29.6 bits (65), Expect = 7.3
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 206 PGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPG 265
P P PPP D D G G G E G G P R +
Sbjct: 34 PPGPSPPPADGDCEDDEDDD-GVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPPLAP 92
Query: 266 SAGPGGGGEED----SPGSASP 283
A P G G + + G A P
Sbjct: 93 QASPAGTGPRERCTPAGGGAEP 114
>gi|5729806 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 117 bits (293), Expect = 3e-26
Identities = 62/118 (52%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 8 PSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRT 67
P +PG PP+A AS A P AGG K RT
Sbjct: 72 PGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTP---AGGGAE--------PRKLSRT 120
Query: 68 PKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
PKCARCRNHGVVS LKGHKR+CRW+DC CA C L+ ERQRVMAAQVALRRQQA E+ +
Sbjct: 121 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKK 178
Score = 29.6 bits (65), Expect = 7.3
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 206 PGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPG 265
P P PPP D D G G G E G G P R +
Sbjct: 34 PPGPSPPPADGDCEDDEDDD-GVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPPLAP 92
Query: 266 SAGPGGGGEED----SPGSASP 283
A P G G + + G A P
Sbjct: 93 QASPAGTGPRERCTPAGGGAEP 114
>gi|153945850 doublesex and mab-3 related transcription factor 2
isoform 2 [Homo sapiens]
Length = 561
Score = 117 bits (293), Expect = 3e-26
Identities = 62/118 (52%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 8 PSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRT 67
P +PG PP+A AS A P AGG K RT
Sbjct: 72 PGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTP---AGGGAE--------PRKLSRT 120
Query: 68 PKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
PKCARCRNHGVVS LKGHKR+CRW+DC CA C L+ ERQRVMAAQVALRRQQA E+ +
Sbjct: 121 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKK 178
Score = 29.6 bits (65), Expect = 7.3
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 206 PGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPG 265
P P PPP D D G G G E G G P R +
Sbjct: 34 PPGPSPPPADGDCEDDEDDD-GVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPPLAP 92
Query: 266 SAGPGGGGEED----SPGSASP 283
A P G G + + G A P
Sbjct: 93 QASPAGTGPRERCTPAGGGAEP 114
>gi|24308352 DMRT-like family B with proline-rich C-terminal, 1
[Homo sapiens]
Length = 342
Score = 99.8 bits (247), Expect = 6e-21
Identities = 56/121 (46%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 61 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA 120
A+K RTPKC+RCRNHG + +KGH CRWK CLC KC LI+ERQ++MAAQ L+ Q A
Sbjct: 2 ADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQAA 61
Query: 121 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 180
+EE EA A G A AA P P S+ G P A G G A
Sbjct: 62 EEEQEAALCAQGPKQASGAAAAA------PAPVPVPAASLRPLSPGTPSGDADPGPEGRA 115
Query: 181 A 181
A
Sbjct: 116 A 116
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 85.5 bits (210), Expect = 1e-16
Identities = 39/54 (72%), Positives = 44/54 (81%)
Query: 66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQ 119
R+P CARCRNHGV + LKGHKR C ++ C C KC LI ER+RVMAAQVALRRQQ
Sbjct: 38 RSPTCARCRNHGVTAHLKGHKRLCLFQACECHKCVLILERRRVMAAQVALRRQQ 91
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 76.3 bits (186), Expect = 7e-14
Identities = 113/405 (27%), Positives = 151/405 (37%), Gaps = 64/405 (15%)
Query: 140 ALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGG--AAGAGGSEAKLQKFDLFP 197
A AA + + PR EV + A G +G+PAG G AA A G+ +
Sbjct: 35 ASAAHHHHLAPRTP-EVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAG 93
Query: 198 KTLLQAGRPGSPLPP-PVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARAS 256
+ G P P PP P +PL P +GP + ++RP +G + S +P+ A+
Sbjct: 94 RARPGGGGPQRPGPPSPRRPLVP----AGPAPPAAKLRPPP-----EGSAGSCAPVPAAA 144
Query: 257 KEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTP 316
A G P AGP P + L + +G G P PG G +GP
Sbjct: 145 AVAAGPEPAPAGPA------KPAGPAALAARAGPGPGPGPGPG-PGPGPGKPAGPGAAQT 197
Query: 317 LDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAA 376
L+ + H + L G + + + A G PP VGAA
Sbjct: 198 LNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPA-------APGTVIQTPP---FVGAA 247
Query: 377 AAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHH---RPLLAGAMAPGALGSLS 433
A A PS AA A AA A P P P A A PP H P A A+ P
Sbjct: 248 APPAPAAPSP-PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP------- 299
Query: 434 SRSAFSPLQPNASHFGADAGAYP-----LGAPLGLSPLRLAYSAAAAHSRGLAFMAPYST 488
P A+ G AGA P G P G+S +AAAA + G+ +P
Sbjct: 300 ---------PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV 350
Query: 489 AGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGP 533
P A L A+ AA++ PT G L P
Sbjct: 351 VQAAPP---------AAQTLAASGPASTAASMVIGPTMQGALPSP 386
Score = 49.3 bits (116), Expect = 9e-06
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 21/179 (11%)
Query: 197 PKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARAS 256
P A P P P P P G +GP T++P V P + ++NG + +P A
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Query: 257 KEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA-PAPGLGGGSGPRQRT 315
AG S G GPG +PG +E+ K +AA PA SGP
Sbjct: 321 GPAGVS--GQPGPGAAAAAPAPGVK--------AESPKRVVQAAPPAAQTLAASGPASTA 370
Query: 316 PLDIL----------TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGP 364
++ P G + +G G V Q++ + G+ A L P
Sbjct: 371 ASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTP 429
Score = 35.8 bits (81), Expect = 0.10
Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 20/156 (12%)
Query: 148 IPPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGR 205
+PP A + GS AA P AG PAG G G A + A K + PK ++QA
Sbjct: 297 VPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE-SPKRVVQAA- 354
Query: 206 PGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPG 265
PP + L A SGP +++ + G + P A P
Sbjct: 355 -----PPAAQTL----AASGPASTAASMVIGPTMQ-------GALPSPAAVPPPAPGTPT 398
Query: 266 SAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAP 301
G G S +P + SG A AP
Sbjct: 399 GLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAP 434
Score = 30.8 bits (68), Expect = 3.3
Identities = 93/400 (23%), Positives = 123/400 (30%), Gaps = 61/400 (15%)
Query: 6 ELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYP 65
+ P GAA A A PP A AA AAA P L R P P
Sbjct: 239 QTPPFVGAAAPPAPAAPSPP---AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295
Query: 66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
P A +N G A A Q A A + E+
Sbjct: 296 AVPPPAAAQNGGSAGAAPA--------PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESP 347
Query: 126 ARELQLLYGTAEGLALA-----AANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 180
R +Q A+ LA + AA+ +I P + P G P G GA
Sbjct: 348 KRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPP---PAPGTPTGLPKGA 404
Query: 181 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGS--- 237
AG A Q P T +G + P + P P + + ++ PG
Sbjct: 405 AG-----AVTQSLSRTP-TATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLV 458
Query: 238 GSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEG 297
SENG LA+ +A + P +P SA P+ +
Sbjct: 459 RSENGQLLMIPQQALAQMQAQAHAQPQTTMAP----RPATPTSAPPV-----------QI 503
Query: 298 EAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGG 357
APG RQ TP I+ +V LQ G Q +
Sbjct: 504 STVQAPGT--PIIARQVTPTTIIKQVSQAQTTVQPSATLQRSPGVQPQLV---------- 551
Query: 358 LAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAA 397
LG AA A++G A A P R A ++A
Sbjct: 552 ----LGGAA--QTASLGTATAVQTGTPQRTVPGATTTSSA 585
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 71.6 bits (174), Expect = 2e-12
Identities = 91/337 (27%), Positives = 112/337 (33%), Gaps = 78/337 (23%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
PP PA E G PG P G G G G G + FP +G P
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERG----FPGLPGPSGEP 982
Query: 207 GSPLPP-------PVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEA 259
G P P P+ P G PG S E PG+ G GSP A+ +
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR----DGSPGAKGDR-- 1036
Query: 260 GGSCPGSAGPGGG-GEEDSPGSASPLGSESGSEADKEEGEAAPAPGLG--------GGSG 310
G GP G G +PG+ P+G S E G A PA +G G G
Sbjct: 1037 -----GETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091
Query: 311 PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP 368
PR G G+ + ++ + HRG GL GP P
Sbjct: 1092 PR-------------------------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSP 1126
Query: 369 DKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL----------QAGPAAPPHHRP 418
+ G + A+ A P +A A G GLP P+ AGP PP
Sbjct: 1127 GEQ--GPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP---- 1180
Query: 419 LLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAY 455
PG G S+ FS L D G Y
Sbjct: 1181 --GPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRY 1215
Score = 65.5 bits (158), Expect = 1e-10
Identities = 89/319 (27%), Positives = 106/319 (33%), Gaps = 36/319 (11%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGS 208
P PA D G PG PAG G G AK + D K P
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 209 PLPPPVKPLSPDGADSGPGTSSPEVRPGS----------GSENGDGESFSGSPLARASKE 258
P PP P+ GA G PG+ G G + P A KE
Sbjct: 846 PAGPP-GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 904
Query: 259 AGGSCPGSAGPGG-GGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPR--QRT 315
G G GP G GE PG P G + AD G A PG G +G R
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG-APGTPGPQGIAGQRGVVGL 963
Query: 316 PLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPDKAAV 373
P R FPG L G G+ + + RG G G A PP ++
Sbjct: 964 PGQRGERGFPG---------LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Query: 374 GAAAAADDAWPSRVDAAAA--------AAAAAGGPGLP-APLQAGPAAPPHHRPLLAGAM 424
A A+ + P R + A A G PG P AP GPA R A
Sbjct: 1015 EGAPGAEGS-PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 1073
Query: 425 APGALGSLSSRSAFSPLQP 443
G +G + +R P P
Sbjct: 1074 PAGPVGPVGARGPAGPQGP 1092
Score = 64.7 bits (156), Expect = 2e-10
Identities = 97/346 (28%), Positives = 114/346 (32%), Gaps = 73/346 (21%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPP-PVKPLSPDGA 222
G PGA AG G G GA G K AG G P PP V P DG
Sbjct: 569 GPPGARGQAGVMGFPGPKGAAGEPGK-------------AGERGVPGPPGAVGPAGKDGE 615
Query: 223 DSGPGTSSPEVRPGSGSENGDGES--FSG-----SPLARASKEAGGSCPGSAG------- 268
G P G E G S F G P A K PG G
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 675
Query: 269 ------PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGP--RQRTPLDIL 320
PG G + PG A P G+ D +G+A APG G G Q P +
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAG-APGAPGSQGAPGLQGMPGERG 734
Query: 321 TRVFPGHRRGVLELVLQGCGG----DVVQAIEQVL----------NHHRGGLAAGLGP-- 364
PG + + +G G D V+ + + + G + GP
Sbjct: 735 AAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG 794
Query: 365 --AAPPDKAAVGAAAAADDAWPSRVDAAAAA------AAAAGGPGLPAPLQAGPAAPPHH 416
AP D+ G A A P D A A A G G P P AGPA PP
Sbjct: 795 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP--AGPAGPPGP 852
Query: 417 RPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLG 462
+ APGA G+ S P A+ F AG P G
Sbjct: 853 ---IGNVGAPGAKGARGSAG-----PPGATGFPGAAGRVGPPGPSG 890
Score = 60.5 bits (145), Expect = 4e-09
Identities = 90/335 (26%), Positives = 113/335 (33%), Gaps = 51/335 (15%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G G G G GG+ A + K+ G +P P+ P P G
Sbjct: 136 GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST-----GGISVPGPMGPSGPRGLP 190
Query: 224 SGPGTSSPEVRPGSGSENGD-------GESFSGSPLARASKEAGGSCPGSAG----PGGG 272
PG P+ G E G+ G P + + PG G PG
Sbjct: 191 GPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250
Query: 273 GEEDSPGSA---SPLGSESGSEADKEEGEAAPAPGLGGGSGPRQR-TPLDILTRVFPGHR 328
G PG+A G S D +G+A PA G P + P + R PG R
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER 310
Query: 329 RGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVD 388
G G+ G GPA PP GA A +A P
Sbjct: 311 GRPGAPGPAGARGNDGAT-------GAAGPPGPTGPAGPP--GFPGAVGAKGEAGPQGPR 361
Query: 389 AAAAAAAAAGGPGLPAPL-QAGPAAPP-----------HHRPLLAGAMA-PGALGSLSSR 435
+ G PG P P AGPA P + P +AGA PGA G +
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ 421
Query: 436 SAFSPLQP--NASHFGA-----DAGAYPLGAPLGL 463
P P N+ GA D GA P+G+
Sbjct: 422 GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGV 456
Score = 51.6 bits (122), Expect = 2e-06
Identities = 89/326 (27%), Positives = 108/326 (33%), Gaps = 71/326 (21%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGGG------------AAGAGGSEAKLQKFDLF 196
PP PA E + G G P G GG A G + +
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG 518
Query: 197 PK-TLLQAGRPGSPLPPPVKPLS-------PDGADSGPGTSSPEVRPG----------SG 238
PK + +AGRPG P K L+ PDG PG + + RPG +G
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Query: 239 SENGDGESFSGSPLARASKEAGGSCPGSAGPGG----GGEEDSPGSASPLGSESGSEADK 294
G + +A + PG+ GP G G + PG A P G
Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG--------- 629
Query: 295 EEGEAAPA--PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLN 352
E GE PA PG G GP PG E QG GD+
Sbjct: 630 ERGEQGPAGSPGFQGLPGPAGP----------PGEAGKPGE---QGVPGDLGAPGPSGAR 676
Query: 353 HHRG-----GLAAGLGPAAPPD-KAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA-P 405
RG G+ GPA P A G A DA A A + G PGL P
Sbjct: 677 GERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA------GAPGAPGSQGAPGLQGMP 730
Query: 406 LQAGPAAPPHHRPLLAGAMAPGALGS 431
+ G A P + A GA GS
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGS 756
Score = 50.8 bits (120), Expect = 3e-06
Identities = 83/298 (27%), Positives = 88/298 (29%), Gaps = 55/298 (18%)
Query: 150 PRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPG 207
P PA G PG PAG G GA GA G EA Q G PG
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-EAGPQGPRGSEGPQGVRGEPG 374
Query: 208 SPLPPPVK-PLSPDGADSGPGTSSPEVRPG-------SGSENGDGESFSGSPLARASKEA 259
P P P GAD PG PG G+ G G P
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSG 434
Query: 260 GGSCPGSAGPGGGGEEDSP----GSASPLGSESGSEADKEEGEAA--PAPGLGGGSGPRQ 313
PGS G G E P G P G E A E G PG GG G
Sbjct: 435 EPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG--- 491
Query: 314 RTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAV 373
+R FPG G G A G GPA P K +
Sbjct: 492 -------SRGFPG---------ADGVAGPKGPA----------GERGSPGPAGP--KGSP 523
Query: 374 GAAAAADDAWPSRVDAAAAAAAAAGGPGLPAP-LQAGPAAPPHHRPLLAGAMAPGALG 430
G A +A A G PG P P + GP P PGA G
Sbjct: 524 GEAGRPGEA------GLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG 575
Score = 46.6 bits (109), Expect = 6e-05
Identities = 110/411 (26%), Positives = 130/411 (31%), Gaps = 109/411 (26%)
Query: 164 DGGGPGA----GAPA--GTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-------L 210
D G PGA GAP G G AG K + D PK G GSP L
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK-----GADGSPGKDGVRGL 765
Query: 211 PPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGE----------SFSGSPLARASKEA 259
P+ P P GA G S P G +G+ G+ F+G P A A
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 825
Query: 260 GGSC-----------PGSAGPGGG----GEEDSPGSASPLGSESGSEADKEEGEAAPA-- 302
G PG AGP G G +PG+ GS A G A
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP 885
Query: 303 PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGL 362
PG G +GP PG + +G G+ A G +
Sbjct: 886 PGPSGNAGP-------------PGPPGPAGKEGGKGPRGETGPA----------GRPGEV 922
Query: 363 GPAAPPDKA-------AVGAAAAADDAWPSRVDAAAAAAAAAGG------PGLPAPL--- 406
GP PP A A G A A P + G PGLP P
Sbjct: 923 GPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP 982
Query: 407 -QAGPAAPPHHR--------PLLAGAM-------APGALGSLSSRSAFSPLQPNASHFGA 450
+ GP+ R P LAG APGA GS + P A
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS-----PGAKGDRG 1037
Query: 451 DAG-AYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRPP 500
+ G A P GAP A + RG P AG V +G R P
Sbjct: 1038 ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGET--GPAGPAGPVGPVGARGP 1086
Score = 41.2 bits (95), Expect = 0.002
Identities = 58/247 (23%), Positives = 77/247 (31%), Gaps = 48/247 (19%)
Query: 206 PGSPLPP-PVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCP 264
PG+ +P P+ PDG++ SP + +G E G++ P A P
Sbjct: 82 PGAEVPEGECCPVCPDGSE------SPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIP 135
Query: 265 GSAG----PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDIL 320
G G PG G PG + D++ PG G SGPR
Sbjct: 136 GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRG------- 188
Query: 321 TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPP-------DKAAV 373
PG QG G+ + G + +GP PP D
Sbjct: 189 ---LPGPPGAPGPQGFQGPPGEPGEP----------GASGPMGPRGPPGPPGKNGDDGEA 235
Query: 374 GAAAAADDAWPSRVDAAAAAAAAAGGPGLP----------APLQAGPAAPPHHRPLLAGA 423
G + P A AG PG+ A AGPA P
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295
Query: 424 MAPGALG 430
APG +G
Sbjct: 296 GAPGQMG 302
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 68.2 bits (165), Expect = 2e-11
Identities = 93/316 (29%), Positives = 112/316 (35%), Gaps = 69/316 (21%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPP-PVKPLSPDGADS 224
G PG P G GG G + G PG P PP P P DG +
Sbjct: 717 GPPGVPGPPGPGGSPGLPG-----------------EIGFPGKPGPPGPTGPPGKDGPNG 759
Query: 225 GPGTSSPEVRPGSGSENG-------DGESFSGSPLARASKEAGGSCPGSAG-PGGGGEED 276
PG + PG E+G GE R ++ PG+ G PG GE+
Sbjct: 760 PPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKG 819
Query: 277 SPGSASPLGSESGSEADK-EEGEAAPA--PGLGGGSGPRQRTPLDILTRVFPGHRRGVLE 333
G LG G + D+ E+GEA PA PGL G T +F H R E
Sbjct: 820 DQGEKGELGL-PGLKGDRGEKGEAGPAGPPGLPG------------TTSLFTPHPRMPGE 866
Query: 334 LVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAA 393
+G GD E L G L GP PP GA + A A
Sbjct: 867 QGPKGEKGDPGLPGEPGLQGRPGELGP-QGPTGPP-----GAKGQ---------EGAHGA 911
Query: 394 AAAAGGPGLPAPLQA-GPAAPPHH--RPLLAGAMAP----GALGSLSSRSAFSPLQPNAS 446
AAG PG P + A GP+ PP P L G G G+ + P+ P
Sbjct: 912 PGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPR-- 969
Query: 447 HFGADAGAYPLGAPLG 462
D GA L P G
Sbjct: 970 ---GDPGAPGLPGPPG 982
Score = 47.8 bits (112), Expect = 3e-05
Identities = 85/315 (26%), Positives = 111/315 (35%), Gaps = 79/315 (25%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG G G G AG G F P+ +P P G
Sbjct: 828 GLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPR-----------MPGEQGPKGEKGDP 876
Query: 224 SGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGSAS 282
PG + RPG G +G P A+ + A G+ PG+AG PG G +PG +
Sbjct: 877 GLPGEPGLQGRPGELGPQGP----TGPPGAKGQEGAHGA-PGAAGNPGAPGHVGAPGPSG 931
Query: 283 PLGS-----------ESGSEADK----EEGEAAP--------APGLGGGSG------PRQ 313
P GS + G +K EEG P APGL G G P
Sbjct: 932 PPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGL 991
Query: 314 R----TPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPD 369
R P + T+ G RG L G Q + RG A G+ P +P
Sbjct: 992 RGSPGLPGPLGTKAACGKVRGSENCALGG----------QCVKGDRG--APGI-PGSPGS 1038
Query: 370 KAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPA----AP-------PHHRP 418
+ G A PS + + G PG P P GPA AP P +P
Sbjct: 1039 RGDPGIGVAGPPG-PSGPPGDKGSPGSRGLPGFPGP--QGPAGRDGAPGNPGERGPPGKP 1095
Query: 419 LLAGAMAPGALGSLS 433
L+ ++PG + L+
Sbjct: 1096 GLSSLLSPGDINLLA 1110
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/173 (30%), Positives = 56/173 (32%), Gaps = 52/173 (30%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G G G G G E K GR G P PP G
Sbjct: 1219 GSPGKEGPPGPQGPSGLPGIPGEEGK-------------EGRDGKPGPP-----GEPGKA 1260
Query: 224 SGPGTSSPEVR---PGSGSENGDGESFSGSPLARASKEAGG-----SCPGSAG------- 268
PG PE PG GD SG+P R A G PG G
Sbjct: 1261 GEPGLPGPEGARGPPGFKGHTGD----SGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGP 1316
Query: 269 ---------PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPR 312
PG G SPG P G+ + E G +PGL G GPR
Sbjct: 1317 QGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENG----SPGLPGFLGPR 1365
Score = 45.1 bits (105), Expect = 2e-04
Identities = 51/182 (28%), Positives = 58/182 (31%), Gaps = 33/182 (18%)
Query: 158 GSVCAADGGGPGA-GAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-LPPPVK 215
G D G PG G+P G G G P G G P P P
Sbjct: 1020 GQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGP----PGDKGSPGSRGLPGFPGPQG 1075
Query: 216 PLSPDGADSGPGTSSPEVRPGSGSENGDGE-----------------SFSGSPLARASKE 258
P DGA PG P +PG S G+ G P + K
Sbjct: 1076 PAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKG 1135
Query: 259 AGGSCPGSAGPGGG-------GEEDSPGSASPLGSESGSEADKEEGEAAPA--PGLGGGS 309
G PG G G G PG A P GS+ AD E G+ PG+ G
Sbjct: 1136 VPGK-PGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFM 1194
Query: 310 GP 311
GP
Sbjct: 1195 GP 1196
Score = 41.6 bits (96), Expect = 0.002
Identities = 72/272 (26%), Positives = 88/272 (32%), Gaps = 49/272 (18%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG G G G G G+E K +AG PG P PP + P G+
Sbjct: 1123 GLPGLPGFKGDKGVPGKPGREGTEGKKG----------EAGPPGLPGPPGIA--GPQGSQ 1170
Query: 224 SGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGE---EDSPGS 280
G + G G F G P A G + PG G E PG
Sbjct: 1171 GERGADGEVGQKGDQGHPGV-PGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGP 1229
Query: 281 ASPLG-----SESGSEADKEEGEAAP--------APGLGGGSGPRQRTPLDILTRVFPGH 327
P G E G E +G+ P PGL G G R F GH
Sbjct: 1230 QGPSGLPGIPGEEGKEG--RDGKPGPPGEPGKAGEPGLPGPEGARGPPG-------FKGH 1280
Query: 328 RRGVLELVLQGCGGDVVQAIEQVLNHHRG-----GLAAGLGPAAPPDKAAVGAAAAADDA 382
+G G + ++ L G G GP PP K G+ + +
Sbjct: 1281 TGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKN--GSPGSPGEP 1338
Query: 383 WPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPP 414
PS + G PGLP L GP PP
Sbjct: 1339 GPSGTPGQKGSKGENGSPGLPGFL--GPRGPP 1368
Score = 41.2 bits (95), Expect = 0.002
Identities = 46/155 (29%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 166 GGPG-AGAPAGTGG-GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG GAP G G G G + + + D FP G+ G P P V P G
Sbjct: 578 GPPGRVGAPGLQGERGEKGTRGEKGE-RGLDGFPGKPGDTGQQGRPGPSGVA--GPQGEK 634
Query: 224 SGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASP 283
G + P PGS + + G+P R + A G PG+ GP G D P
Sbjct: 635 GDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGP-PGARGPIGPEGRDGPPGLQG 693
Query: 284 LGSESGSEADKE-------EGEAAPAPGLGGGSGP 311
L + G +G P PG+ G GP
Sbjct: 694 LRGKKGDMGPPGIPGLLGLQGPPGP-PGVPGPPGP 727
Score = 33.5 bits (75), Expect = 0.51
Identities = 64/240 (26%), Positives = 77/240 (32%), Gaps = 77/240 (32%)
Query: 204 GRPGSPLPPPVKP----LSPDGADSGPGTSSPEVRPGSGSENG----DGESFSGSPLARA 255
G+PG P P K + P G PG + P PG + G GES S L R
Sbjct: 1411 GQPGDPGIPGHKGHTGLMGPQGL---PGENGPVGPPGPPGQPGFPGLRGESPSMETLRRL 1467
Query: 256 SKEAGG--------------------SCPGSAGPGGG-GEEDSPGSASPLGSESGSEADK 294
+E G S G GP G G++ PG A P+G
Sbjct: 1468 IQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMG--------- 1518
Query: 295 EEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHH 354
E G PG GG GP + P RG G +
Sbjct: 1519 EPGR----PGQGGLEGPS--------GPIGPKGERGAK-------GDPGAPGV------- 1552
Query: 355 RGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPP 414
GL +GP P + G A D P + AG PGLP GP PP
Sbjct: 1553 --GLRGEMGPPGIPGQP--GEPGYAKDGLPG-IPGPQGETGPAGHPGLP-----GPPGPP 1602
Score = 32.0 bits (71), Expect = 1.5
Identities = 63/252 (25%), Positives = 76/252 (30%), Gaps = 36/252 (14%)
Query: 209 PLPPPVKPLSPDGADSG----------------PGTSSPEVRPGSGSENGDGESFSGSPL 252
P PPP +P +P G G + P PG + G G+P
Sbjct: 453 PPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIG-AIGPVGAPG 511
Query: 253 ARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPR 312
+ K G G G G GE+ S G P G + E GE PGL G G R
Sbjct: 512 PKGEKGDVGI--GPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELG-EPGLPGEVGMR 568
Query: 313 --QRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDK 370
Q P PG V LQG G E+ +G P P D
Sbjct: 569 GPQGPP------GLPGPPGRVGAPGLQGERG------EKGTRGEKGERGLDGFPGKPGDT 616
Query: 371 AAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQA--GPAAPPHHRPLLAGAMAPGA 428
G + A P A G PG + G P R PGA
Sbjct: 617 GQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGA 676
Query: 429 LGSLSSRSAFSP 440
G + P
Sbjct: 677 RGPIGPEGRDGP 688
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 64.7 bits (156), Expect = 2e-10
Identities = 80/296 (27%), Positives = 101/296 (34%), Gaps = 78/296 (26%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PLSPDGA 222
G PG P+G G GA GA G G PG PP + P G
Sbjct: 993 GFPGLPGPSGEPGKQGAPGASGDR----------------GPPGPVGPPGLTGPAGEPGR 1036
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
+ PG P R G+ GD R A G+ PG+ GP G SPG A
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGD----------RGETGAVGA-PGAPGPPG-----SPGPAG 1080
Query: 283 PLGS-----ESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQ 337
P G E+G++ A A G+ G GPR
Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPR------------------------- 1115
Query: 338 GCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAA 397
G G+ + E+ L HRG P P GA+ A + P +
Sbjct: 1116 GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKD 1175
Query: 398 GGPGLPAPL----------QAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQP 443
G G+P P+ + GPA PP + P G PG G SAF+ L P
Sbjct: 1176 GANGIPGPIGPPGPRGRSGETGPAGPPGN-PGPPG--PPGPPGPGIDMSAFAGLGP 1228
Score = 58.9 bits (141), Expect = 1e-08
Identities = 82/298 (27%), Positives = 97/298 (32%), Gaps = 67/298 (22%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPL-------S 218
G PG P G G +GA G + GRPG P P +
Sbjct: 564 GRPGDAGPQGKVG-PSGAPGED----------------GRPGPPGPQGARGQPGVMGFPG 606
Query: 219 PDGADSGPGTSSPEVRPGSGSENG----DGESFSGSPLARASKEAGGSCPGSAGPGGGGE 274
P GA+ PG + + PG+ G DGE+ + P A G PG G
Sbjct: 607 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG--PAGERGEQGAPGPSGF 664
Query: 275 EDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLEL 334
+ PG P G E G D+ A APGL G G R FPG R
Sbjct: 665 QGLPGPPGPPG-EGGKPGDQGVPGEAGAPGLVGPRGERG----------FPGERGSPGAQ 713
Query: 335 VLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP-------------DKAAVGAAAAA 379
LQG G L G G GPA PP ++ A G A
Sbjct: 714 GLQGPRG---------LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 764
Query: 380 DDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA 437
D A GG GL P+ GP P PG GS +R A
Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPI--GPPGPAGANGEKGEVGPPGPAGSAGARGA 820
Score = 58.2 bits (139), Expect = 2e-08
Identities = 94/320 (29%), Positives = 110/320 (34%), Gaps = 49/320 (15%)
Query: 142 AAANG----IIPPRPAYEVFGSVCAADGGGPGAGAPAGTGG-----GAAGAGGSEAKL-Q 191
A ANG + PP PA + G G PAG G G GA G + + Q
Sbjct: 797 AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 856
Query: 192 KFDL-FPKTLLQAGRPGSPLPPPVK-PLSPDGADSGPG-TSSPEVRPGSGSENGDGESFS 248
K D P +G PG P V P GA PG T P G +G
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 916
Query: 249 GSPLARASKEAGGSCPGSAGPGG-GGEEDSPGSASPLGSESGSEADKEEG-EAAPAP-GL 305
P + K+ G +GP G GE G A P G + D G E P P GL
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 306 GGGSG----PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG----- 356
G G P QR R FPG L G G+ + + RG
Sbjct: 977 AGQRGIVGLPGQRG-----ERGFPG---------LPGPSGEPGKQGAPGASGDRGPPGPV 1022
Query: 357 GLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAA-----AAAAAAGGPGLPAPL-QAGP 410
G GPA P + A D P R AA A G PG P P GP
Sbjct: 1023 GPPGLTGPAGEPGREGSPGA----DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1078
Query: 411 AAPPHHRPLLAGAMAPGALG 430
A P + A A G +G
Sbjct: 1079 AGPTGKQGDRGEAGAQGPMG 1098
Score = 55.5 bits (132), Expect = 1e-07
Identities = 75/277 (27%), Positives = 91/277 (32%), Gaps = 53/277 (19%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG P G G A G A+ G PG V P+ P G
Sbjct: 471 GEPGPAGPQGAPGPAGEEGKRGAR--------------GEPGG-----VGPIGPPGERGA 511
Query: 226 PGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAG----PGGGGEEDSPGS 280
PG + G +G + GE P A + PG G PG G PG
Sbjct: 512 PGNRGFPGQDGLAGPKGAPGER---GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 568
Query: 281 ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCG 340
A P G S A E+G P PG G G FPG + G
Sbjct: 569 AGPQGKVGPSGAPGEDGRPGP-PGPQGARGQPG-------VMGFPGPK---------GAN 611
Query: 341 GDVVQAIEQVLNHHRGGLAAGLGPAAPPDK-AAVGAAAAADDAWPSRVDAAAAAAAAAGG 399
G+ +A E+ GL G P K GAA A P+ A +G
Sbjct: 612 GEPGKAGEK-------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 664
Query: 400 PGLPAPL-QAGPAAPPHHRPLLAGAMAPGALGSLSSR 435
GLP P G P + + A APG +G R
Sbjct: 665 QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGER 701
Score = 55.1 bits (131), Expect = 2e-07
Identities = 81/332 (24%), Positives = 95/332 (28%), Gaps = 51/332 (15%)
Query: 166 GGPGAGAPAGTGGGAAG---------AGGSEAKLQKFDLFPKTLLQA------------- 203
G PG P G GG A AGG++ + + + P
Sbjct: 165 GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224
Query: 204 GRPGSPLPP----PVKPLSPDGADSGPGTSSPEVRPGSGSENG-----DGESFSGSPLAR 254
G PG P P P+ P P G PG +PG E G F G+P
Sbjct: 225 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 284
Query: 255 ASKEAGG-----SCPGSAG-PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGG 308
K G G AG PG GE SPG G E G PA G
Sbjct: 285 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Query: 309 SGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPP 368
Q P V P G G G +A G P P
Sbjct: 345 GNDGQPGPAGPPGPVGPAGGPG-----FPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 399
Query: 369 DKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGA 428
GA+ +A A AG PG P P GP P GA P
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP--RGPPGP-------QGATGPLG 450
Query: 429 LGSLSSRSAFSPLQPNASHFGADAGAYPLGAP 460
+ + + G A P GAP
Sbjct: 451 PKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 482
Score = 52.4 bits (124), Expect = 1e-06
Identities = 71/266 (26%), Positives = 84/266 (31%), Gaps = 60/266 (22%)
Query: 164 DGGGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PL 217
+ G PG P G G G+ GA G + P+ L G PG+ P P
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQG--------PRGL--PGTPGTDGPKGASGPA 737
Query: 218 SPDGADSGPGTSSPEVRPGS----GSENGDGESFSGSPLARASKEAGGSCPGSAGP---- 269
P GA PG G+ G + G+ P K+ G G GP
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 797
Query: 270 GGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRR 329
G GE+ G P GS A E GE P PG G +GP
Sbjct: 798 GANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP------------------ 838
Query: 330 GVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDA 389
G G EQ G A G A P G + A P+ V
Sbjct: 839 -------PGADGQPGAKGEQ-------GEAGQKGDAGAP--GPQGPSGAPGPQGPTGVTG 882
Query: 390 AAAAAAAAGGPGLPA-PLQAGPAAPP 414
A A G PG P AG PP
Sbjct: 883 PKGARGAQGPPGATGFPGAAGRVGPP 908
Score = 52.0 bits (123), Expect = 1e-06
Identities = 80/283 (28%), Positives = 100/283 (35%), Gaps = 58/283 (20%)
Query: 164 DGGGPGAGAPAGTG-GGAAGAGGSEAKLQKFDLFPKTLL-QAGRPGSPLPPPVKPLSPDG 221
DG AGAP G G+ G GS + P+ L + GR G P G
Sbjct: 296 DGAKGEAGAPGVKGESGSPGENGSPGPMG-----PRGLPGERGRTG-----PAGAAGARG 345
Query: 222 ADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGG----GEEDS 277
D PG + P PG G G F G+P A+ EAG + G+ GP G GE +
Sbjct: 346 NDGQPGPAGP---PGPVGPAG-GPGFPGAPGAKG--EAGPT--GARGPEGAQGPRGEPGT 397
Query: 278 PGSASPLGSESGSEADKEEGE--AAPAPGLGGGSG-PRQRTPLDILTRVFPGHRRGVLEL 334
PGS P G+ D G +A APG+ G G P R P PG + L
Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP--------PGPQGATGPL 449
Query: 335 VLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAA 394
+G G+ G+A G P K G A P+ + A
Sbjct: 450 GPKGQTGE-------------PGIAGFKGEQGP--KGEPGPAGPQGAPGPAGEEGKRGAR 494
Query: 395 AAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA 437
GG GP PP R PG G + A
Sbjct: 495 GEPGG--------VGPIGPPGERGAPGNRGFPGQDGLAGPKGA 529
Score = 52.0 bits (123), Expect = 1e-06
Identities = 78/265 (29%), Positives = 91/265 (34%), Gaps = 65/265 (24%)
Query: 166 GGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPD 220
G PGA P G G GAAG G + + D+ K G G+P
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKG--DRGDVGEK-----GPEGAP----------- 779
Query: 221 GADSGPGTSSPEVRPGSGSENGD-GESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPG 279
G D G G + P PG NG+ GE P GS PG GE PG
Sbjct: 780 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP--------AGSAGARGAPGERGETGPPG 831
Query: 280 SAS---PLGSESGSEADKEEGEA-----APAPGLGGGSG-PRQRTPLDILTRVFPGHRRG 330
A P G++ A E+GEA A APG G SG P + P + P RG
Sbjct: 832 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV---TGPKGARG 888
Query: 331 VLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAA 390
QG G G G PP + G PS D
Sbjct: 889 A-----QGPPGAT-------------GFPGAAGRVGPP--GSNGNPGPPGPPGPSGKDGP 928
Query: 391 AAAAAAAGGPGLPA-PLQAGPAAPP 414
A +G PG P GPA PP
Sbjct: 929 KGARGDSGPPGRAGEPGLQGPAGPP 953
Score = 50.1 bits (118), Expect = 5e-06
Identities = 83/314 (26%), Positives = 97/314 (30%), Gaps = 87/314 (27%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG PAG G G K G PG P DG
Sbjct: 120 GPPGPQGPAGEQGPRGDRGDKGEK--------------GAPG--------PRGRDGEPGT 157
Query: 226 PGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGS----------------CPGSAG- 268
PG P PG G G +F+ ++AGG+ PG AG
Sbjct: 158 PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA 217
Query: 269 ------PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPA--PGLGGGSGPRQRTPLDIL 320
G GE PG + P+G + G+ A PG G GP P
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP----PGPQG 273
Query: 321 TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP----DKAAVG 374
R FPG G G + HRG GL G A P + + G
Sbjct: 274 ARGFPG---------TPGLPG---------VKGHRGYPGLDGAKGEAGAPGVKGESGSPG 315
Query: 375 AAAAADDAWPSRV------DAAAAAAAAAGGPGLPAPLQAGPAAP--PHHRPLLAGAMAP 426
+ P + A AA A G G P P AGP P P P G AP
Sbjct: 316 ENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP--AGPPGPVGPAGGPGFPG--AP 371
Query: 427 GALGSLSSRSAFSP 440
GA G A P
Sbjct: 372 GAKGEAGPTGARGP 385
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 64.7 bits (156), Expect = 2e-10
Identities = 80/296 (27%), Positives = 101/296 (34%), Gaps = 78/296 (26%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PLSPDGA 222
G PG P+G G GA GA G G PG PP + P G
Sbjct: 924 GFPGLPGPSGEPGKQGAPGASGDR----------------GPPGPVGPPGLTGPAGEPGR 967
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
+ PG P R G+ GD R A G+ PG+ GP G SPG A
Sbjct: 968 EGSPGADGPPGRDGAAGVKGD----------RGETGAVGA-PGAPGPPG-----SPGPAG 1011
Query: 283 PLGS-----ESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQ 337
P G E+G++ A A G+ G GPR
Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPR------------------------- 1046
Query: 338 GCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAA 397
G G+ + E+ L HRG P P GA+ A + P +
Sbjct: 1047 GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKD 1106
Query: 398 GGPGLPAPL----------QAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQP 443
G G+P P+ + GPA PP + P G PG G SAF+ L P
Sbjct: 1107 GANGIPGPIGPPGPRGRSGETGPAGPPGN-PGPPG--PPGPPGPGIDMSAFAGLGP 1159
Score = 58.9 bits (141), Expect = 1e-08
Identities = 82/298 (27%), Positives = 97/298 (32%), Gaps = 67/298 (22%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPL-------S 218
G PG P G G +GA G + GRPG P P +
Sbjct: 495 GRPGDAGPQGKVG-PSGAPGED----------------GRPGPPGPQGARGQPGVMGFPG 537
Query: 219 PDGADSGPGTSSPEVRPGSGSENG----DGESFSGSPLARASKEAGGSCPGSAGPGGGGE 274
P GA+ PG + + PG+ G DGE+ + P A G PG G
Sbjct: 538 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG--PAGERGEQGAPGPSGF 595
Query: 275 EDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLEL 334
+ PG P G E G D+ A APGL G G R FPG R
Sbjct: 596 QGLPGPPGPPG-EGGKPGDQGVPGEAGAPGLVGPRGERG----------FPGERGSPGAQ 644
Query: 335 VLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP-------------DKAAVGAAAAA 379
LQG G L G G GPA PP ++ A G A
Sbjct: 645 GLQGPRG---------LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 695
Query: 380 DDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA 437
D A GG GL P+ GP P PG GS +R A
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPI--GPPGPAGANGEKGEVGPPGPAGSAGARGA 751
Score = 58.2 bits (139), Expect = 2e-08
Identities = 94/320 (29%), Positives = 110/320 (34%), Gaps = 49/320 (15%)
Query: 142 AAANG----IIPPRPAYEVFGSVCAADGGGPGAGAPAGTGG-----GAAGAGGSEAKL-Q 191
A ANG + PP PA + G G PAG G G GA G + + Q
Sbjct: 728 AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 787
Query: 192 KFDL-FPKTLLQAGRPGSPLPPPVK-PLSPDGADSGPG-TSSPEVRPGSGSENGDGESFS 248
K D P +G PG P V P GA PG T P G +G
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 847
Query: 249 GSPLARASKEAGGSCPGSAGPGG-GGEEDSPGSASPLGSESGSEADKEEG-EAAPAP-GL 305
P + K+ G +GP G GE G A P G + D G E P P GL
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 306 GGGSG----PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG----- 356
G G P QR R FPG L G G+ + + RG
Sbjct: 908 AGQRGIVGLPGQRG-----ERGFPG---------LPGPSGEPGKQGAPGASGDRGPPGPV 953
Query: 357 GLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAA-----AAAAAAGGPGLPAPL-QAGP 410
G GPA P + A D P R AA A G PG P P GP
Sbjct: 954 GPPGLTGPAGEPGREGSPGA----DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1009
Query: 411 AAPPHHRPLLAGAMAPGALG 430
A P + A A G +G
Sbjct: 1010 AGPTGKQGDRGEAGAQGPMG 1029
Score = 55.5 bits (132), Expect = 1e-07
Identities = 75/277 (27%), Positives = 91/277 (32%), Gaps = 53/277 (19%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG P G G A G A+ G PG V P+ P G
Sbjct: 402 GEPGPAGPQGAPGPAGEEGKRGAR--------------GEPGG-----VGPIGPPGERGA 442
Query: 226 PGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAG----PGGGGEEDSPGS 280
PG + G +G + GE P A + PG G PG G PG
Sbjct: 443 PGNRGFPGQDGLAGPKGAPGER---GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 499
Query: 281 ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCG 340
A P G S A E+G P PG G G FPG + G
Sbjct: 500 AGPQGKVGPSGAPGEDGRPGP-PGPQGARGQPG-------VMGFPGPK---------GAN 542
Query: 341 GDVVQAIEQVLNHHRGGLAAGLGPAAPPDK-AAVGAAAAADDAWPSRVDAAAAAAAAAGG 399
G+ +A E+ GL G P K GAA A P+ A +G
Sbjct: 543 GEPGKAGEK-------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 595
Query: 400 PGLPAPL-QAGPAAPPHHRPLLAGAMAPGALGSLSSR 435
GLP P G P + + A APG +G R
Sbjct: 596 QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGER 632
Score = 55.1 bits (131), Expect = 2e-07
Identities = 81/332 (24%), Positives = 95/332 (28%), Gaps = 51/332 (15%)
Query: 166 GGPGAGAPAGTGGGAAG---------AGGSEAKLQKFDLFPKTLLQA------------- 203
G PG P G GG A AGG++ + + + P
Sbjct: 96 GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 155
Query: 204 GRPGSPLPP----PVKPLSPDGADSGPGTSSPEVRPGSGSENG-----DGESFSGSPLAR 254
G PG P P P+ P P G PG +PG E G F G+P
Sbjct: 156 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 215
Query: 255 ASKEAGG-----SCPGSAG-PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGG 308
K G G AG PG GE SPG G E G PA G
Sbjct: 216 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 275
Query: 309 SGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPP 368
Q P V P G G G +A G P P
Sbjct: 276 GNDGQPGPAGPPGPVGPAGGPG-----FPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 330
Query: 369 DKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGA 428
GA+ +A A AG PG P P GP P GA P
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP--RGPPGP-------QGATGPLG 381
Query: 429 LGSLSSRSAFSPLQPNASHFGADAGAYPLGAP 460
+ + + G A P GAP
Sbjct: 382 PKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 413
Score = 52.4 bits (124), Expect = 1e-06
Identities = 71/266 (26%), Positives = 84/266 (31%), Gaps = 60/266 (22%)
Query: 164 DGGGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PL 217
+ G PG P G G G+ GA G + P+ L G PG+ P P
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQG--------PRGL--PGTPGTDGPKGASGPA 668
Query: 218 SPDGADSGPGTSSPEVRPGS----GSENGDGESFSGSPLARASKEAGGSCPGSAGP---- 269
P GA PG G+ G + G+ P K+ G G GP
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 728
Query: 270 GGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRR 329
G GE+ G P GS A E GE P PG G +GP
Sbjct: 729 GANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP------------------ 769
Query: 330 GVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDA 389
G G EQ G A G A P G + A P+ V
Sbjct: 770 -------PGADGQPGAKGEQ-------GEAGQKGDAGAP--GPQGPSGAPGPQGPTGVTG 813
Query: 390 AAAAAAAAGGPGLPA-PLQAGPAAPP 414
A A G PG P AG PP
Sbjct: 814 PKGARGAQGPPGATGFPGAAGRVGPP 839
Score = 52.0 bits (123), Expect = 1e-06
Identities = 80/283 (28%), Positives = 100/283 (35%), Gaps = 58/283 (20%)
Query: 164 DGGGPGAGAPAGTG-GGAAGAGGSEAKLQKFDLFPKTLL-QAGRPGSPLPPPVKPLSPDG 221
DG AGAP G G+ G GS + P+ L + GR G P G
Sbjct: 227 DGAKGEAGAPGVKGESGSPGENGSPGPMG-----PRGLPGERGRTG-----PAGAAGARG 276
Query: 222 ADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGG----GEEDS 277
D PG + P PG G G F G+P A+ EAG + G+ GP G GE +
Sbjct: 277 NDGQPGPAGP---PGPVGPAG-GPGFPGAPGAKG--EAGPT--GARGPEGAQGPRGEPGT 328
Query: 278 PGSASPLGSESGSEADKEEGE--AAPAPGLGGGSG-PRQRTPLDILTRVFPGHRRGVLEL 334
PGS P G+ D G +A APG+ G G P R P PG + L
Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP--------PGPQGATGPL 380
Query: 335 VLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAA 394
+G G+ G+A G P K G A P+ + A
Sbjct: 381 GPKGQTGE-------------PGIAGFKGEQGP--KGEPGPAGPQGAPGPAGEEGKRGAR 425
Query: 395 AAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA 437
GG GP PP R PG G + A
Sbjct: 426 GEPGG--------VGPIGPPGERGAPGNRGFPGQDGLAGPKGA 460
Score = 52.0 bits (123), Expect = 1e-06
Identities = 78/265 (29%), Positives = 91/265 (34%), Gaps = 65/265 (24%)
Query: 166 GGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPD 220
G PGA P G G GAAG G + + D+ K G G+P
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKG--DRGDVGEK-----GPEGAP----------- 710
Query: 221 GADSGPGTSSPEVRPGSGSENGD-GESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPG 279
G D G G + P PG NG+ GE P GS PG GE PG
Sbjct: 711 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP--------AGSAGARGAPGERGETGPPG 762
Query: 280 SAS---PLGSESGSEADKEEGEA-----APAPGLGGGSG-PRQRTPLDILTRVFPGHRRG 330
A P G++ A E+GEA A APG G SG P + P + P RG
Sbjct: 763 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV---TGPKGARG 819
Query: 331 VLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAA 390
QG G G G PP + G PS D
Sbjct: 820 A-----QGPPGAT-------------GFPGAAGRVGPP--GSNGNPGPPGPPGPSGKDGP 859
Query: 391 AAAAAAAGGPGLPA-PLQAGPAAPP 414
A +G PG P GPA PP
Sbjct: 860 KGARGDSGPPGRAGEPGLQGPAGPP 884
Score = 50.1 bits (118), Expect = 5e-06
Identities = 83/314 (26%), Positives = 97/314 (30%), Gaps = 87/314 (27%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG PAG G G K G PG P DG
Sbjct: 51 GPPGPQGPAGEQGPRGDRGDKGEK--------------GAPG--------PRGRDGEPGT 88
Query: 226 PGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGS----------------CPGSAG- 268
PG P PG G G +F+ ++AGG+ PG AG
Sbjct: 89 PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA 148
Query: 269 ------PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPA--PGLGGGSGPRQRTPLDIL 320
G GE PG + P+G + G+ A PG G GP P
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP----PGPQG 204
Query: 321 TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP----DKAAVG 374
R FPG G G + HRG GL G A P + + G
Sbjct: 205 ARGFPG---------TPGLPG---------VKGHRGYPGLDGAKGEAGAPGVKGESGSPG 246
Query: 375 AAAAADDAWPSRV------DAAAAAAAAAGGPGLPAPLQAGPAAP--PHHRPLLAGAMAP 426
+ P + A AA A G G P P AGP P P P G AP
Sbjct: 247 ENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP--AGPPGPVGPAGGPGFPG--AP 302
Query: 427 GALGSLSSRSAFSP 440
GA G A P
Sbjct: 303 GAKGEAGPTGARGP 316
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 64.7 bits (156), Expect = 2e-10
Identities = 82/310 (26%), Positives = 111/310 (35%), Gaps = 65/310 (20%)
Query: 158 GSVCAAD-----GGGPGAGAP-AGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLP 211
GS AAD G GA +P A G A A EA + +A PGSP
Sbjct: 62 GSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTA 121
Query: 212 PPVK----------PLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGG 261
+ P + DGA P +P+ + S + SG + KEAG
Sbjct: 122 AEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFK-LSGFSFKKNKKEAGE 180
Query: 262 SCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILT 321
A GG++++ G A+ +E+G+ + GE A APG +G
Sbjct: 181 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAAS----GEQAAAPGEEAAAGEEG-------- 228
Query: 322 RVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADD 381
GGD +A Q A + P PP A AA++
Sbjct: 229 ----------------AAGGDPQEAKPQ---------EAAVAPEKPP---ASDETKAAEE 260
Query: 382 AWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPH------HRPLLAGAMAPGALGSLSSR 435
PS+V+ A A A AP AGP APP P A A + A S ++
Sbjct: 261 --PSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAASSACAAPSQEAQ 318
Query: 436 SAFSPLQPNA 445
SP P A
Sbjct: 319 PECSPEAPPA 328
Score = 33.9 bits (76), Expect = 0.39
Identities = 27/89 (30%), Positives = 36/89 (40%)
Query: 359 AAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRP 418
A G PAA ++ A + AA + + + AAAAA AG + A A P
Sbjct: 60 ANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSP 119
Query: 419 LLAGAMAPGALGSLSSRSAFSPLQPNASH 447
A A A S SS A P+ S+
Sbjct: 120 TAAEGEAASAASSTSSPKAEDGATPSPSN 148
Score = 31.2 bits (69), Expect = 2.5
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 35/147 (23%)
Query: 254 RASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQ 313
R + A S P A G G ASP +ESG++ + + +APA
Sbjct: 18 RPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQANGSAPAADKE------- 70
Query: 314 RTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGP---AAPPDK 370
E G G A E +G AA P A+P +K
Sbjct: 71 -------------------EPAAAGSGAASPSAAE------KGEPAAAAAPEAGASPVEK 105
Query: 371 AAVGAAAAADDAWPSRVDAAAAAAAAA 397
A AA+ P+ + AA+AA++
Sbjct: 106 EAPAEGEAAEPGSPTAAEGEAASAASS 132
Score = 30.4 bits (67), Expect = 4.3
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 241 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA 300
NGD + A+ +A GS P + +++ P +A G+ S S A+K E AA
Sbjct: 42 NGDASPAAAESGAKEELQANGSAPAA-------DKEEPAAAGS-GAASPSAAEKGEPAAA 93
Query: 301 PAPGLG 306
AP G
Sbjct: 94 AAPEAG 99
Score = 29.6 bits (65), Expect = 7.3
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 366 APPDKAAVGAAAAADDAWPSRVDAAAAAAAAA--GGPGLPAPLQAGPAAPPHHRPLLAGA 423
A + A G+A AAD P+ + AA+ +AA G P A +AG + P A
Sbjct: 54 AKEELQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEA 113
Query: 424 MAPGALGSLSSRSAFSPLQPNASHFGADAGAYP 456
PG+ + +A + + S A+ GA P
Sbjct: 114 AEPGSPTAAEGEAASA--ASSTSSPKAEDGATP 144
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 62.0 bits (149), Expect = 1e-09
Identities = 102/346 (29%), Positives = 124/346 (35%), Gaps = 66/346 (19%)
Query: 132 LYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQ 191
L G +A +G PR +FG D G G P G G G K +
Sbjct: 1166 LQGPVGAPGIAGGDGEPGPRGQQGMFGQ--KGDEGARGFPGPPGPIGLQGLPGPPGEKGE 1223
Query: 192 KFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGS-GSENGDGESFSGS 250
D+ P G PG P P P P+GAD P+ PGS GS G GE G
Sbjct: 1224 NGDVGPM-----GPPGPP--GPRGPQGPNGADG------PQGPPGSVGSVGGVGEK--GE 1268
Query: 251 PLARASKEAGG-SCPGSAGPGGG-------GEEDSPGSASPLGSESGSEADKEEGEAAPA 302
P EAG PG AG GG GE PG+A P G++ D +G P
Sbjct: 1269 P-----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Query: 303 PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGL 362
G G GP PG + G GGD + + G +
Sbjct: 1324 -GFPGDPGP-------------PGEPGPAGQ---DGVGGDKGEDGDPG-QPGPPGPSGEA 1365
Query: 363 GPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPPHHRPLLA 421
GP PP K AA A+ + A A A G PG P+ GPA P L
Sbjct: 1366 GPPGPPGKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1423
Query: 422 GAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLR 467
PG +G P A+ G D P+G P GL L+
Sbjct: 1424 ---IPGPVGEQG--------LPGAA--GQDGPPGPMGPP-GLPGLK 1455
Score = 59.3 bits (142), Expect = 9e-09
Identities = 91/328 (27%), Positives = 108/328 (32%), Gaps = 71/328 (21%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
PP P E A G G P G G G AG G FP + G P
Sbjct: 1001 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG----------FPG---ERGLP 1047
Query: 207 GSPLPPPVK----PLSPDGADSGPG------TSSPEVRPG----------SGSENGDGES 246
G+ P +K P P G PG T+ P PG +G + GE
Sbjct: 1048 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1107
Query: 247 FSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADK-EEGEAAP---- 301
P R + PG AGP G ED + GS+ DK E G P
Sbjct: 1108 GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ 1167
Query: 302 ----APGLGGGS---GPRQRTPL-----DILTRVFPGHRRGVLELVLQGCGGDVVQAIEQ 349
APG+ GG GPR + + D R FPG + LQG G + E
Sbjct: 1168 GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPGEKGE- 1223
Query: 350 VLNHHRGGLAAGLGPAAPPDKAAVGAAAAAD--DAWPSRVDAAAAAA-----AAAGGPGL 402
G +GP PP AD P V + AG PG
Sbjct: 1224 ------NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1277
Query: 403 PAPLQAGPAAPPHHRPLLAGAMAPGALG 430
P +AG P R A PGA G
Sbjct: 1278 PG--EAGVGGPKGERGEKGEAGPPGAAG 1303
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/148 (31%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG G G G G S AK G G P P P G
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAK--------------GESGDP-----GPQGPRGVQGP 581
Query: 226 PG-TSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPL 284
PG T P R G++ G G G P A+ + G PG PG G G P
Sbjct: 582 PGPTGKPGKRGRPGADGGRG--MPGEPGAKGDRGFDG-LPGL--PGDKGHRGERGPQGPP 636
Query: 285 GSESGSEADKEEGEAAPAPGLGGGSGPR 312
G E+GE P GL G +GPR
Sbjct: 637 GPPGDDGMRGEDGEIGPR-GLPGEAGPR 663
Score = 36.2 bits (82), Expect = 0.079
Identities = 79/314 (25%), Positives = 104/314 (33%), Gaps = 65/314 (20%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDL----FPKTLL-QAGRPGSPLPPPVKP 216
D G G P G G G G G + ++ L P+ LL G PG+P P +
Sbjct: 623 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 682
Query: 217 LSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEED 276
+ DG G P+ PG + G+ P + PG GP +
Sbjct: 683 V--DGPPGPKGNMGPQGEPGPPGQQGNP-----GPQGLPGPQGPIGPPGEKGP-----QG 730
Query: 277 SPGSASPLGSESGSEADKEEGEAAPAPGLG--------GGSGPRQRTPLDILTRV----- 323
PG A G++ +EG++ LG G GPR D + +
Sbjct: 731 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG 790
Query: 324 ------FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAA 377
FPG + ++ L+G G+V Q G GP P G A
Sbjct: 791 EKGEDGFPGFKG---DMGLKGDRGEVGQI----------GPRGEDGPEGPK-----GRAG 832
Query: 378 AADDAWPSRVDAAAAAAAAAGGPGLPA-PLQAGPAAPPHHRPLLAGAM----APGALGSL 432
D PS A G PGLP P + GP P GA A G G
Sbjct: 833 PTGDPGPS---GQAGEKGKLGVPGLPGYPGRQGPKGSTGF-PGFPGANGEKGARGVAGKP 888
Query: 433 SSRSAFSPLQPNAS 446
R P P S
Sbjct: 889 GPRGQRGPTGPRGS 902
Score = 35.0 bits (79), Expect = 0.17
Identities = 73/305 (23%), Positives = 89/305 (29%), Gaps = 84/305 (27%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G+ G G GA G + AG+PG P P G
Sbjct: 856 GYPGRQGPKGSTGFPGFPGANGEKGARGV----------AGKPG-----PRGQRGPTGPR 900
Query: 224 SGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
G P +PG G+ GDG PG GE G
Sbjct: 901 GSRGARGPTGKPGPKGTSGGDGP-----------------------PGPPGERGPQGPQG 937
Query: 283 PLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGD 342
P+G PG G GP + L PGH E QG G
Sbjct: 938 PVG----------------FPGPKGPPGPPGKDGL-------PGHPGQRGETGFQGKTGP 974
Query: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGL 402
GG+ GP + +G P AA G G
Sbjct: 975 ----------PGPGGVVGPQGPTG--ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 1022
Query: 403 PAPL----QAGPAAP---PHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAY 455
P P + GPA P R L APG G + P+ + G+ A
Sbjct: 1023 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV-GSPGERGSAGTAG 1081
Query: 456 PLGAP 460
P+G P
Sbjct: 1082 PIGLP 1086
Score = 34.3 bits (77), Expect = 0.30
Identities = 45/165 (27%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-LPPPVKPLSPDGA 222
G PG+ G G G G G + + L P T G G +P P PL P G
Sbjct: 1456 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGP 1514
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSP--GS 280
PG P+ GS G + SG P PGS GP G + P S
Sbjct: 1515 PGLPGPQGPKGNKGSTGPAGQ-KGDSGLP----------GPPGSPGPPGEVIQPLPILSS 1563
Query: 281 ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFP 325
G +AD ++ + G+ G DI FP
Sbjct: 1564 KKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFP 1608
Score = 33.5 bits (75), Expect = 0.51
Identities = 76/317 (23%), Positives = 87/317 (27%), Gaps = 77/317 (24%)
Query: 169 GAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGT 228
G G PA T G A +K +++ PG + P P P G PG
Sbjct: 414 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVE---PGMLVEGPPGPAGPAGIMGPPGL 470
Query: 229 SSPEVRPGSGSENG--------DGESFSGSPLARASKEAGGSCPGSAGP----------- 269
P PG + G + G P GS GP
Sbjct: 471 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 530
Query: 270 ----------GGGGEEDSPGSASPLGSESGSEADKEEGEAAP--------APGLGGGSGP 311
G G G P+G S A E G+ P PG G G
Sbjct: 531 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGK 590
Query: 312 RQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPD 369
R R D R PG G GD RG GL P P D
Sbjct: 591 RGRPGAD-GGRGMPGE---------PGAKGD------------RGFDGL-----PGLPGD 623
Query: 370 KAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGAL 429
K G P D G GLP +AGP R LL PGA
Sbjct: 624 KGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG--EAGP------RGLLGPRGTPGAP 675
Query: 430 GSLSSRSAFSPLQPNAS 446
G P P +
Sbjct: 676 GQPGMAGVDGPPGPKGN 692
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 62.0 bits (149), Expect = 1e-09
Identities = 102/346 (29%), Positives = 124/346 (35%), Gaps = 66/346 (19%)
Query: 132 LYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQ 191
L G +A +G PR +FG D G G P G G G K +
Sbjct: 1115 LQGPVGAPGIAGGDGEPGPRGQQGMFGQ--KGDEGARGFPGPPGPIGLQGLPGPPGEKGE 1172
Query: 192 KFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGS-GSENGDGESFSGS 250
D+ P G PG P P P P+GAD P+ PGS GS G GE G
Sbjct: 1173 NGDVGPM-----GPPGPP--GPRGPQGPNGADG------PQGPPGSVGSVGGVGEK--GE 1217
Query: 251 PLARASKEAGG-SCPGSAGPGGG-------GEEDSPGSASPLGSESGSEADKEEGEAAPA 302
P EAG PG AG GG GE PG+A P G++ D +G P
Sbjct: 1218 P-----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Query: 303 PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGL 362
G G GP PG + G GGD + + G +
Sbjct: 1273 -GFPGDPGP-------------PGEPGPAGQ---DGVGGDKGEDGDPG-QPGPPGPSGEA 1314
Query: 363 GPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPPHHRPLLA 421
GP PP K AA A+ + A A A G PG P+ GPA P L
Sbjct: 1315 GPPGPPGKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1372
Query: 422 GAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLR 467
PG +G P A+ G D P+G P GL L+
Sbjct: 1373 ---IPGPVGEQG--------LPGAA--GQDGPPGPMGPP-GLPGLK 1404
Score = 59.3 bits (142), Expect = 9e-09
Identities = 91/328 (27%), Positives = 108/328 (32%), Gaps = 71/328 (21%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
PP P E A G G P G G G AG G FP + G P
Sbjct: 950 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG----------FPG---ERGLP 996
Query: 207 GSPLPPPVK----PLSPDGADSGPG------TSSPEVRPG----------SGSENGDGES 246
G+ P +K P P G PG T+ P PG +G + GE
Sbjct: 997 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1056
Query: 247 FSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADK-EEGEAAP---- 301
P R + PG AGP G ED + GS+ DK E G P
Sbjct: 1057 GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ 1116
Query: 302 ----APGLGGGS---GPRQRTPL-----DILTRVFPGHRRGVLELVLQGCGGDVVQAIEQ 349
APG+ GG GPR + + D R FPG + LQG G + E
Sbjct: 1117 GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPGEKGE- 1172
Query: 350 VLNHHRGGLAAGLGPAAPPDKAAVGAAAAAD--DAWPSRVDAAAAAA-----AAAGGPGL 402
G +GP PP AD P V + AG PG
Sbjct: 1173 ------NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1226
Query: 403 PAPLQAGPAAPPHHRPLLAGAMAPGALG 430
P +AG P R A PGA G
Sbjct: 1227 PG--EAGVGGPKGERGEKGEAGPPGAAG 1252
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/148 (31%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG G G G G S AK G G P P P G
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAK--------------GESGDP-----GPQGPRGVQGP 530
Query: 226 PG-TSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPL 284
PG T P R G++ G G G P A+ + G PG PG G G P
Sbjct: 531 PGPTGKPGKRGRPGADGGRG--MPGEPGAKGDRGFDG-LPGL--PGDKGHRGERGPQGPP 585
Query: 285 GSESGSEADKEEGEAAPAPGLGGGSGPR 312
G E+GE P GL G +GPR
Sbjct: 586 GPPGDDGMRGEDGEIGPR-GLPGEAGPR 612
Score = 36.2 bits (82), Expect = 0.079
Identities = 79/314 (25%), Positives = 104/314 (33%), Gaps = 65/314 (20%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDL----FPKTLL-QAGRPGSPLPPPVKP 216
D G G P G G G G G + ++ L P+ LL G PG+P P +
Sbjct: 572 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 631
Query: 217 LSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEED 276
+ DG G P+ PG + G+ P + PG GP +
Sbjct: 632 V--DGPPGPKGNMGPQGEPGPPGQQGNP-----GPQGLPGPQGPIGPPGEKGP-----QG 679
Query: 277 SPGSASPLGSESGSEADKEEGEAAPAPGLG--------GGSGPRQRTPLDILTRV----- 323
PG A G++ +EG++ LG G GPR D + +
Sbjct: 680 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG 739
Query: 324 ------FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAA 377
FPG + ++ L+G G+V Q G GP P G A
Sbjct: 740 EKGEDGFPGFKG---DMGLKGDRGEVGQI----------GPRGEDGPEGPK-----GRAG 781
Query: 378 AADDAWPSRVDAAAAAAAAAGGPGLPA-PLQAGPAAPPHHRPLLAGAM----APGALGSL 432
D PS A G PGLP P + GP P GA A G G
Sbjct: 782 PTGDPGPS---GQAGEKGKLGVPGLPGYPGRQGPKGSTGF-PGFPGANGEKGARGVAGKP 837
Query: 433 SSRSAFSPLQPNAS 446
R P P S
Sbjct: 838 GPRGQRGPTGPRGS 851
Score = 35.0 bits (79), Expect = 0.17
Identities = 73/305 (23%), Positives = 89/305 (29%), Gaps = 84/305 (27%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G+ G G GA G + AG+PG P P G
Sbjct: 805 GYPGRQGPKGSTGFPGFPGANGEKGARGV----------AGKPG-----PRGQRGPTGPR 849
Query: 224 SGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
G P +PG G+ GDG PG GE G
Sbjct: 850 GSRGARGPTGKPGPKGTSGGDGP-----------------------PGPPGERGPQGPQG 886
Query: 283 PLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGD 342
P+G PG G GP + L PGH E QG G
Sbjct: 887 PVG----------------FPGPKGPPGPPGKDGL-------PGHPGQRGETGFQGKTGP 923
Query: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGL 402
GG+ GP + +G P AA G G
Sbjct: 924 ----------PGPGGVVGPQGPTG--ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 971
Query: 403 PAPL----QAGPAAP---PHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAY 455
P P + GPA P R L APG G + P+ + G+ A
Sbjct: 972 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV-GSPGERGSAGTAG 1030
Query: 456 PLGAP 460
P+G P
Sbjct: 1031 PIGLP 1035
Score = 34.3 bits (77), Expect = 0.30
Identities = 45/165 (27%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-LPPPVKPLSPDGA 222
G PG+ G G G G G + + L P T G G +P P PL P G
Sbjct: 1405 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGP 1463
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSP--GS 280
PG P+ GS G + SG P PGS GP G + P S
Sbjct: 1464 PGLPGPQGPKGNKGSTGPAGQ-KGDSGLP----------GPPGSPGPPGEVIQPLPILSS 1512
Query: 281 ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFP 325
G +AD ++ + G+ G DI FP
Sbjct: 1513 KKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFP 1557
Score = 33.5 bits (75), Expect = 0.51
Identities = 76/317 (23%), Positives = 87/317 (27%), Gaps = 77/317 (24%)
Query: 169 GAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGT 228
G G PA T G A +K +++ PG + P P P G PG
Sbjct: 363 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVE---PGMLVEGPPGPAGPAGIMGPPGL 419
Query: 229 SSPEVRPGSGSENG--------DGESFSGSPLARASKEAGGSCPGSAGP----------- 269
P PG + G + G P GS GP
Sbjct: 420 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 479
Query: 270 ----------GGGGEEDSPGSASPLGSESGSEADKEEGEAAP--------APGLGGGSGP 311
G G G P+G S A E G+ P PG G G
Sbjct: 480 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGK 539
Query: 312 RQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPD 369
R R D R PG G GD RG GL P P D
Sbjct: 540 RGRPGAD-GGRGMPGE---------PGAKGD------------RGFDGL-----PGLPGD 572
Query: 370 KAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGAL 429
K G P D G GLP +AGP R LL PGA
Sbjct: 573 KGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG--EAGP------RGLLGPRGTPGAP 624
Query: 430 GSLSSRSAFSPLQPNAS 446
G P P +
Sbjct: 625 GQPGMAGVDGPPGPKGN 641
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 62.0 bits (149), Expect = 1e-09
Identities = 102/346 (29%), Positives = 124/346 (35%), Gaps = 66/346 (19%)
Query: 132 LYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQ 191
L G +A +G PR +FG D G G P G G G K +
Sbjct: 1154 LQGPVGAPGIAGGDGEPGPRGQQGMFGQ--KGDEGARGFPGPPGPIGLQGLPGPPGEKGE 1211
Query: 192 KFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGS-GSENGDGESFSGS 250
D+ P G PG P P P P+GAD P+ PGS GS G GE G
Sbjct: 1212 NGDVGPM-----GPPGPP--GPRGPQGPNGADG------PQGPPGSVGSVGGVGEK--GE 1256
Query: 251 PLARASKEAGG-SCPGSAGPGGG-------GEEDSPGSASPLGSESGSEADKEEGEAAPA 302
P EAG PG AG GG GE PG+A P G++ D +G P
Sbjct: 1257 P-----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Query: 303 PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGL 362
G G GP PG + G GGD + + G +
Sbjct: 1312 -GFPGDPGP-------------PGEPGPAGQ---DGVGGDKGEDGDPG-QPGPPGPSGEA 1353
Query: 363 GPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPPHHRPLLA 421
GP PP K AA A+ + A A A G PG P+ GPA P L
Sbjct: 1354 GPPGPPGKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1411
Query: 422 GAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLR 467
PG +G P A+ G D P+G P GL L+
Sbjct: 1412 ---IPGPVGEQG--------LPGAA--GQDGPPGPMGPP-GLPGLK 1443
Score = 59.3 bits (142), Expect = 9e-09
Identities = 91/328 (27%), Positives = 108/328 (32%), Gaps = 71/328 (21%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
PP P E A G G P G G G AG G FP + G P
Sbjct: 989 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG----------FPG---ERGLP 1035
Query: 207 GSPLPPPVK----PLSPDGADSGPG------TSSPEVRPG----------SGSENGDGES 246
G+ P +K P P G PG T+ P PG +G + GE
Sbjct: 1036 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1095
Query: 247 FSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADK-EEGEAAP---- 301
P R + PG AGP G ED + GS+ DK E G P
Sbjct: 1096 GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ 1155
Query: 302 ----APGLGGGS---GPRQRTPL-----DILTRVFPGHRRGVLELVLQGCGGDVVQAIEQ 349
APG+ GG GPR + + D R FPG + LQG G + E
Sbjct: 1156 GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPGEKGE- 1211
Query: 350 VLNHHRGGLAAGLGPAAPPDKAAVGAAAAAD--DAWPSRVDAAAAAA-----AAAGGPGL 402
G +GP PP AD P V + AG PG
Sbjct: 1212 ------NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1265
Query: 403 PAPLQAGPAAPPHHRPLLAGAMAPGALG 430
P +AG P R A PGA G
Sbjct: 1266 PG--EAGVGGPKGERGEKGEAGPPGAAG 1291
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/148 (31%), Positives = 52/148 (35%), Gaps = 26/148 (17%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG G G G G S AK G G P P P G
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAK--------------GESGDP-----GPQGPRGVQGP 569
Query: 226 PG-TSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPL 284
PG T P R G++ G G G P A+ + G PG PG G G P
Sbjct: 570 PGPTGKPGKRGRPGADGGRG--MPGEPGAKGDRGFDG-LPGL--PGDKGHRGERGPQGPP 624
Query: 285 GSESGSEADKEEGEAAPAPGLGGGSGPR 312
G E+GE P GL G +GPR
Sbjct: 625 GPPGDDGMRGEDGEIGPR-GLPGEAGPR 651
Score = 36.2 bits (82), Expect = 0.079
Identities = 79/314 (25%), Positives = 104/314 (33%), Gaps = 65/314 (20%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDL----FPKTLL-QAGRPGSPLPPPVKP 216
D G G P G G G G G + ++ L P+ LL G PG+P P +
Sbjct: 611 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 670
Query: 217 LSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEED 276
+ DG G P+ PG + G+ P + PG GP +
Sbjct: 671 V--DGPPGPKGNMGPQGEPGPPGQQGNP-----GPQGLPGPQGPIGPPGEKGP-----QG 718
Query: 277 SPGSASPLGSESGSEADKEEGEAAPAPGLG--------GGSGPRQRTPLDILTRV----- 323
PG A G++ +EG++ LG G GPR D + +
Sbjct: 719 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG 778
Query: 324 ------FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAA 377
FPG + ++ L+G G+V Q G GP P G A
Sbjct: 779 EKGEDGFPGFKG---DMGLKGDRGEVGQI----------GPRGEDGPEGPK-----GRAG 820
Query: 378 AADDAWPSRVDAAAAAAAAAGGPGLPA-PLQAGPAAPPHHRPLLAGAM----APGALGSL 432
D PS A G PGLP P + GP P GA A G G
Sbjct: 821 PTGDPGPS---GQAGEKGKLGVPGLPGYPGRQGPKGSTGF-PGFPGANGEKGARGVAGKP 876
Query: 433 SSRSAFSPLQPNAS 446
R P P S
Sbjct: 877 GPRGQRGPTGPRGS 890
Score = 35.0 bits (79), Expect = 0.17
Identities = 73/305 (23%), Positives = 89/305 (29%), Gaps = 84/305 (27%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G+ G G GA G + AG+PG P P G
Sbjct: 844 GYPGRQGPKGSTGFPGFPGANGEKGARGV----------AGKPG-----PRGQRGPTGPR 888
Query: 224 SGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
G P +PG G+ GDG PG GE G
Sbjct: 889 GSRGARGPTGKPGPKGTSGGDGP-----------------------PGPPGERGPQGPQG 925
Query: 283 PLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGD 342
P+G PG G GP + L PGH E QG G
Sbjct: 926 PVG----------------FPGPKGPPGPPGKDGL-------PGHPGQRGETGFQGKTGP 962
Query: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGL 402
GG+ GP + +G P AA G G
Sbjct: 963 ----------PGPGGVVGPQGPTG--ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 1010
Query: 403 PAPL----QAGPAAP---PHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAY 455
P P + GPA P R L APG G + P+ + G+ A
Sbjct: 1011 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV-GSPGERGSAGTAG 1069
Query: 456 PLGAP 460
P+G P
Sbjct: 1070 PIGLP 1074
Score = 34.3 bits (77), Expect = 0.30
Identities = 45/165 (27%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-LPPPVKPLSPDGA 222
G PG+ G G G G G + + L P T G G +P P PL P G
Sbjct: 1444 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGP 1502
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSP--GS 280
PG P+ GS G + SG P PGS GP G + P S
Sbjct: 1503 PGLPGPQGPKGNKGSTGPAGQ-KGDSGLP----------GPPGSPGPPGEVIQPLPILSS 1551
Query: 281 ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFP 325
G +AD ++ + G+ G DI FP
Sbjct: 1552 KKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFP 1596
Score = 33.5 bits (75), Expect = 0.51
Identities = 76/317 (23%), Positives = 87/317 (27%), Gaps = 77/317 (24%)
Query: 169 GAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGT 228
G G PA T G A +K +++ PG + P P P G PG
Sbjct: 402 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVE---PGMLVEGPPGPAGPAGIMGPPGL 458
Query: 229 SSPEVRPGSGSENG--------DGESFSGSPLARASKEAGGSCPGSAGP----------- 269
P PG + G + G P GS GP
Sbjct: 459 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 518
Query: 270 ----------GGGGEEDSPGSASPLGSESGSEADKEEGEAAP--------APGLGGGSGP 311
G G G P+G S A E G+ P PG G G
Sbjct: 519 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGK 578
Query: 312 RQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPD 369
R R D R PG G GD RG GL P P D
Sbjct: 579 RGRPGAD-GGRGMPGE---------PGAKGD------------RGFDGL-----PGLPGD 611
Query: 370 KAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGAL 429
K G P D G GLP +AGP R LL PGA
Sbjct: 612 KGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG--EAGP------RGLLGPRGTPGAP 663
Query: 430 GSLSSRSAFSPLQPNAS 446
G P P +
Sbjct: 664 GQPGMAGVDGPPGPKGN 680
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 60.5 bits (145), Expect = 4e-09
Identities = 115/412 (27%), Positives = 148/412 (35%), Gaps = 59/412 (14%)
Query: 146 GIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFD--LFP------ 197
G+ P G GG P P G G GAG F L P
Sbjct: 40 GVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADA 99
Query: 198 KTLLQAGRPGSPLP--PPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARA 255
+A + G+ L P V L A S PG P+ PG+G + G G P
Sbjct: 100 AAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQ--PGAGVKPGKVPGV-GLP---- 152
Query: 256 SKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRT 315
GG PG+ PG G PG P G+ +A G A PG+G GP+
Sbjct: 153 GVYPGGVLPGARFPGVGV---LPGV--PTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGV 207
Query: 316 PLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGA 375
PL +P + L G G + + GG+A G A P VG
Sbjct: 208 PLG-----YP-----IKAPKLPGGYGLPYTTGKLPYGYGPGGVAGAAGKAGYPTGTGVGP 257
Query: 376 AAAADDAWPSRVDAAAAAAAAAGGPG----LPAPLQAGPAAPPHHRPLLAGAMAPGALGS 431
AAA AAAA AAA G G LP AG P P + G G +
Sbjct: 258 QAAA---------AAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGIAGVGTPAA 308
Query: 432 LSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGL 491
++ +A + A+ +GA AG P G P G P + A G+ P + +
Sbjct: 309 AAAAAAAA----KAAKYGAAAGLVP-GGP-GFGPGVVGVPGAGVPGVGV----PGAGIPV 358
Query: 492 VPTLGF-RPPMDYAFSDLMRDRSAAAAAAVHKEPTYG-GGL--YGPMVNGAP 539
VP G + S ++AA AA P G GG+ YG G P
Sbjct: 359 VPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFP 410
Score = 49.3 bits (116), Expect = 9e-06
Identities = 89/309 (28%), Positives = 105/309 (33%), Gaps = 56/309 (18%)
Query: 165 GGGPGAG-------------APAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAG---RPGS 208
GG PG G A G G AA A + AK +F L P + G PG
Sbjct: 435 GGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGV 494
Query: 209 PLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAG-GSCPGSA 267
+ P V L+P G PG V PG G G G + A+K A +A
Sbjct: 495 GVAPGVG-LAP-GVGVAPGVG---VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAA 549
Query: 268 GPGGGGEEDSPGSASP-LGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPG 326
G G G G P LG +G G A PG G G PG
Sbjct: 550 GLGAGIPGLGVGVGVPGLGVGAGVPG---LGVGAGVPGFGAVPGALAAAKAAKYGAAVPG 606
Query: 327 HRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSR 386
G+ L G G VV G GPAA AA A AAA A
Sbjct: 607 VLGGLGALGGVGIPGGVV----------------GAGPAA----AAAAAKAAAKAAQFGL 646
Query: 387 VDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAF--SPLQPN 444
V AA GG G+P G P A A A +++R F SP+ P
Sbjct: 647 VGAAGLGGLGVGGLGVPGVGGLGGIPP--------AAAAKAAKYGVAARPGFGLSPIFPG 698
Query: 445 ASHFGADAG 453
+ G G
Sbjct: 699 GACLGKACG 707
Score = 48.9 bits (115), Expect = 1e-05
Identities = 104/385 (27%), Positives = 137/385 (35%), Gaps = 82/385 (21%)
Query: 136 AEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDL 195
A+ AA G++P P + G V G PGAG P G G GAG +
Sbjct: 316 AKAAKYGAAAGLVPGGPGFGP-GVV-----GVPGAGVP---GVGVPGAG--------IPV 358
Query: 196 FPKTLLQAGRPGSPLPPPVKP---------LSPDGADSGPGTSS-PEVRPGSGSENGDGE 245
P AG PG+ +P V P + GA G G P G+G G G
Sbjct: 359 VPG----AGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGV 414
Query: 246 SFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGSASPLGSESG-----SEADKEEGEA 299
G P GG PG G PG G ++ +A+ ++ G + A K +A
Sbjct: 415 GVGGIPGVAGVPGVGG-VPGVGGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKA 473
Query: 300 AP---APGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG 356
A PG+G G V PG GV V G V +
Sbjct: 474 AQFGLVPGVGVAPG----------VGVAPGV--GVAPGVGLAPGVGVAPGV--------- 512
Query: 357 GLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA-----PLQAGPA 411
G+A G+G A V AAA + ++ AAA AG PGL L G
Sbjct: 513 GVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAG 572
Query: 412 APPHHRPLLAGA------MAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSP 465
P L GA PGAL + + + + GA G G +G P
Sbjct: 573 VP----GLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGP 628
Query: 466 LRLAYSAAAAHSRGLAFMAPYSTAG 490
+AAAA ++ A A + G
Sbjct: 629 -----AAAAAAAKAAAKAAQFGLVG 648
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 60.5 bits (145), Expect = 4e-09
Identities = 115/412 (27%), Positives = 148/412 (35%), Gaps = 59/412 (14%)
Query: 146 GIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFD--LFP------ 197
G+ P G GG P P G G GAG F L P
Sbjct: 40 GVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADA 99
Query: 198 KTLLQAGRPGSPLP--PPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARA 255
+A + G+ L P V L A S PG P+ PG+G + G G P
Sbjct: 100 AAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQ--PGAGVKPGKVPGV-GLP---- 152
Query: 256 SKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRT 315
GG PG+ PG G PG P G+ +A G A PG+G GP+
Sbjct: 153 GVYPGGVLPGARFPGVGV---LPGV--PTGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGV 207
Query: 316 PLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGA 375
PL +P + L G G + + GG+A G A P VG
Sbjct: 208 PLG-----YP-----IKAPKLPGGYGLPYTTGKLPYGYGPGGVAGAAGKAGYPTGTGVGP 257
Query: 376 AAAADDAWPSRVDAAAAAAAAAGGPG----LPAPLQAGPAAPPHHRPLLAGAMAPGALGS 431
AAA AAAA AAA G G LP AG P P + G G +
Sbjct: 258 QAAA---------AAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGIAGVGTPAA 308
Query: 432 LSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGL 491
++ +A + A+ +GA AG P G P G P + A G+ P + +
Sbjct: 309 AAAAAAAA----KAAKYGAAAGLVP-GGP-GFGPGVVGVPGAGVPGVGV----PGAGIPV 358
Query: 492 VPTLGF-RPPMDYAFSDLMRDRSAAAAAAVHKEPTYG-GGL--YGPMVNGAP 539
VP G + S ++AA AA P G GG+ YG G P
Sbjct: 359 VPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFP 410
Score = 52.4 bits (124), Expect = 1e-06
Identities = 85/296 (28%), Positives = 101/296 (34%), Gaps = 43/296 (14%)
Query: 165 GGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAG---RPGSPLPPPVKPLSPDG 221
GG PG G G G + AK K+ L P + G PG + P V L+P G
Sbjct: 429 GGVPGVGGVPGVGISPEAQAAAAAKAAKYGLVPGVGVAPGVGVAPGVGVAPGVG-LAP-G 486
Query: 222 ADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAG-GSCPGSAGPGGGGEEDSPGS 280
PG V PG G G G + A+K A +AG G G G
Sbjct: 487 VGVAPGVG---VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGV 543
Query: 281 ASP-LGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGC 339
P LG +G G A PG G G PG G+ L G
Sbjct: 544 GVPGLGVGAGVPG---LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGI 600
Query: 340 GGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGG 399
G VV G GPAA AA A AAA A V AA GG
Sbjct: 601 PGGVV----------------GAGPAA----AAAAAKAAAKAAQFGLVGAAGLGGLGVGG 640
Query: 400 PGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAF--SPLQPNASHFGADAG 453
G+P G P A A A +++R F SP+ P + G G
Sbjct: 641 LGVPGVGGLGGIPP--------AAAAKAAKYGVAARPGFGLSPIFPGGACLGKACG 688
Score = 46.6 bits (109), Expect = 6e-05
Identities = 100/377 (26%), Positives = 131/377 (34%), Gaps = 85/377 (22%)
Query: 136 AEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDL 195
A+ AA G++P P + G V G PGAG P G G GAG +
Sbjct: 316 AKAAKYGAAAGLVPGGPGFGP-GVV-----GVPGAGVP---GVGVPGAG--------IPV 358
Query: 196 FPKTLLQAGRPGSPLPPPVKP---------LSPDGADSGPGTSS-PEVRPGSGSENGDGE 245
P AG PG+ +P V P + GA G G P G+G G G
Sbjct: 359 VPG----AGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGV 414
Query: 246 SFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPG 304
G P GG PG G PG G ++ +A+ ++ G P G
Sbjct: 415 GVGGIPGVAGVPGVGG-VPGVGGVPGVGISPEAQAAAAAKAAKYG---------LVPGVG 464
Query: 305 LGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGP 364
+ G G V PG GV V G V + G+A G+G
Sbjct: 465 VAPGVG------------VAPGV--GVAPGVGLAPGVGVAPGV---------GVAPGVGV 501
Query: 365 AAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA-----PLQAGPAAPPHHRPL 419
A V AAA + ++ AAA AG PGL L G P L
Sbjct: 502 APGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVP----GL 557
Query: 420 LAGA------MAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAA 473
GA PGAL + + + + GA G G +G P +AA
Sbjct: 558 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGP-----AAA 612
Query: 474 AAHSRGLAFMAPYSTAG 490
AA ++ A A + G
Sbjct: 613 AAAAKAAAKAAQFGLVG 629
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 59.7 bits (143), Expect = 7e-09
Identities = 88/309 (28%), Positives = 103/309 (33%), Gaps = 44/309 (14%)
Query: 137 EGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLF 196
E +A A+ G+ PP A+ AA A G G G G S A+
Sbjct: 94 EHMAQASTLGLSPPSQAFPAHPEAPAAAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPP 153
Query: 197 PKTLLQAGRPGSPLPPPVKPL--------SPDGADSGPGTSSPEVRPGSGSENGDGESFS 248
L P P PPP P S G SG G S V S +
Sbjct: 154 APPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHSRDFVLRRDLSATAPAAAMH 213
Query: 249 GSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGG 308
G+PL + GS A P P SA S SG+ A G G
Sbjct: 214 GAPLGGEQRSGTGSPQHPAPP--------PHSAGMFISASGTYA-----------GPDGS 254
Query: 309 SGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPP 368
GP L GH + + G A ++ A G A
Sbjct: 255 GGPALFPALHDTPGAPGGHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDA--- 311
Query: 369 DKAAVGAAAAAD----DAWPSRVDAAAAAAAAAGGPG------LPAPLQAGPAAP---PH 415
AV AAAAA A ++ AAAAAAAA GPG P P P AP PH
Sbjct: 312 HYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHPH 371
Query: 416 -HRPLLAGA 423
H P L GA
Sbjct: 372 QHHPHLPGA 380
Score = 45.1 bits (105), Expect = 2e-04
Identities = 84/347 (24%), Positives = 113/347 (32%), Gaps = 58/347 (16%)
Query: 170 AGAPAGTGGGAAGAG------GSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
AG PA + AA A G++ + L P+ + QA G P P P+
Sbjct: 60 AGPPAHSQLRAAVAHLRLRDLGADPGVATTPLGPEHMAQASTLGLSPPSQAFPAHPEAPA 119
Query: 224 SGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASP 283
+ ++ PG+GS G S P S P P P + SP
Sbjct: 120 AAARAAALVAHPGAGSYPCGGGSSGAQP----------SAPPPPAP------PLPPTPSP 163
Query: 284 LGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRG-VLELVLQGCGGD 342
G G GG SG GH R VL L
Sbjct: 164 PPPPPPPPPPALSGYTTTNSGGGGSSG--------------KGHSRDFVLRRDLSATAPA 209
Query: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGL 402
+ R G + PA PP A + +A+ A P +GGP L
Sbjct: 210 AAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPD----------GSGGPAL 259
Query: 403 PAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA---------FSPLQPNASHFGADAG 453
L P AP H L G M G + ++ +A F+P +A H+GA A
Sbjct: 260 FPALHDTPGAPGGHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDA-HYGAVAA 318
Query: 454 AYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRPP 500
A A G + L + AAA + A P+ P PP
Sbjct: 319 A-AAAALHGYGAVNLNLNLAAAAAAAAAGPGPHLQHHAPPPAPPPPP 364
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 59.3 bits (142), Expect = 9e-09
Identities = 96/366 (26%), Positives = 117/366 (31%), Gaps = 52/366 (14%)
Query: 154 YEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPP 213
Y GS GGG G G G GGG + S ++ P T R GSP
Sbjct: 178 YSKPGSDKKEPGGGGGGGGGGGGGGGGVSSEKSGFRVPSATCQPFT----PRTGSP-SSS 232
Query: 214 VKPLSPDGADSGPGTSSPEVRP-------GSGSENGDGESFSGSPLARASKEAGGSCPGS 266
SP G S G +PE + G G + G S G P A SC G
Sbjct: 233 ASACSPGGMLSSAG-GAPEGKDDKKDTDVGGGGKGTGGASAEGGPTGLAHGRI--SCGGG 289
Query: 267 AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPG 326
D LGS+ G + G GSGP T +L
Sbjct: 290 INVDVNQHPDGGPGGKALGSDCGGSS-----------GSSSGSGPSAPTSSSVLGS---- 334
Query: 327 HRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSR 386
G++ V G V + + G LA G PP G A D P
Sbjct: 335 ---GLVAPVSPYKPGQTVFPLPPAGMTYPGSLA-GAYAGYPPQFLPHGVAL--DPTKPGS 388
Query: 387 VDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNAS 446
+ A AAAAAG G P + P LAGA P + + R + AS
Sbjct: 389 LVGAQLAAAAAGSLGCSKPAGSSP---------LAGASPPSVMTASLCRDPYCLSYHCAS 439
Query: 447 HFGADAGAY------PLGAPLGL-SPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRP 499
H A A P A L S L Y H + A + P+L P
Sbjct: 440 HLAGAAAASASCAHDPAAAAAALKSGYPLVYPTHPLHGVHSSLTAAAAAGATPPSLAGHP 499
Query: 500 PMDYAF 505
Y F
Sbjct: 500 LYPYGF 505
Score = 53.5 bits (127), Expect = 5e-07
Identities = 104/392 (26%), Positives = 131/392 (33%), Gaps = 69/392 (17%)
Query: 174 AGTGGGAAGAGGSEAKLQKFDLFPKTLLQAG-RPGSPLPPPVKPLSPDGADSGPGTSSPE 232
A GGGA GAGG A + P L G S P KP S G G
Sbjct: 138 ASNGGGAGGAGGGAAGDKDTKSGPLKLSDIGVEDKSSFKPYSKPGSDKKEPGGGGGGG-- 195
Query: 233 VRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGS--ASPLGSESGS 290
G G G G S S S P + P SPG +S G+ G
Sbjct: 196 ---GGGGGGGGGVSSEKSGFRVPSATCQPFTPRTGSPSSSASACSPGGMLSSAGGAPEGK 252
Query: 291 EADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQV 350
+ K+ G GG S T L H R CGG + + Q
Sbjct: 253 DDKKDTDVGGGGKGTGGASAEGGPTGL--------AHGR-------ISCGGGINVDVNQH 297
Query: 351 LNHHRGGLA------------AGLGPAAPPDKAAVGAAAAA--------DDAWP----SR 386
+ GG A +G GP+AP + +G+ A +P
Sbjct: 298 PDGGPGGKALGSDCGGSSGSSSGSGPSAPTSSSVLGSGLVAPVSPYKPGQTVFPLPPAGM 357
Query: 387 VDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGA-MAPGALGSL--SSRSAFSPLQP 443
+ A A AG P P L G A P L GA +A A GSL S + SPL
Sbjct: 358 TYPGSLAGAYAGYP--PQFLPHGVALDPTKPGSLVGAQLAAAAAGSLGCSKPAGSSPL-- 413
Query: 444 NASHFGADAGAYP---LGAPLGLSPLRLAYSAAA--AHSRGLAFMAPYSTAGLVPTLGFR 498
AGA P + A L P L+Y A+ A + + + A L
Sbjct: 414 --------AGASPPSVMTASLCRDPYCLSYHCASHLAGAAAASASCAHDPAAAAAALKSG 465
Query: 499 PPMDYAFSDL--MRDRSAAAAAAVHKEPTYGG 528
P+ Y L + AAAAA P+ G
Sbjct: 466 YPLVYPTHPLHGVHSSLTAAAAAGATPPSLAG 497
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 58.9 bits (141), Expect = 1e-08
Identities = 82/296 (27%), Positives = 111/296 (37%), Gaps = 43/296 (14%)
Query: 144 ANGIIP-PRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEA--KLQKFDLFPKTL 200
A+G P P+P + +G P P A G+G + A K++ D +L
Sbjct: 209 ADGNAPGPQPPPVRIQDIKTENGTCPSPPQPLSPAA-ALGSGSAAAVPKIESPDSSSSSL 267
Query: 201 LQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGE----SFSGSPLARAS 256
P LP +PLS DGADS P +P P S+ + S GSP + A+
Sbjct: 268 SSGSSPPGSLPS-ARPLSLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAA 326
Query: 257 KEAGGSCPGSAGPGGGGEED-------SPGS----ASPLGSESGSEADKEEGEAAPAPGL 305
+ + G +A G SPG +SP S + + G A A G
Sbjct: 327 ELSSGLLASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGGGGGAGAAGG 386
Query: 306 GGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGD-------------VVQAIEQVLN 352
GG+G L ++ G R G L+ G GG V + L+
Sbjct: 387 AGGAG-TYHCNLQAMSLYAAGERGGHLQGAPGGAGGSAVDDPLPDYSLPPVTSSSSSSLS 445
Query: 353 HHRGGLAAGLGPAAPPDKAAVGAA-------AAADDAWPSRVDAAAAAAAAAGGPG 401
H GG G G A AA A D + +AAAAAAAAG PG
Sbjct: 446 HGGGGGGGGGGQEAGHHPAAHQGRLTSWYLNQAGGDL--GHLASAAAAAAAAGYPG 499
Score = 48.5 bits (114), Expect = 2e-05
Identities = 79/338 (23%), Positives = 116/338 (34%), Gaps = 72/338 (21%)
Query: 8 PSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRT 67
P P AA + + A P + S S +++ ++ +S P G L PL L A+ P
Sbjct: 239 PLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPP----GSLPSARPLSLDGADSAPPP 294
Query: 68 PKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEAR 127
P + H + + + + ++ A
Sbjct: 295 PAPSAPPPH----------------------------HSQGFSVDNIMTSLRGSPQSAAA 326
Query: 128 ELQLLYGTAEGLALAAANGIIPPRP--AYE-----VFGSVCA---ADGGGPGAGAPAGTG 177
EL G A ++ GI PP AY ++ S C+ + G G G AG
Sbjct: 327 ELSS--GLLASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGGGGGAGAA 384
Query: 178 GGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGS 237
GGA GAG LQ L+ AG G L GA G G
Sbjct: 385 GGAGGAGTYHCNLQAMSLY-----AAGERGGHL---------QGAPGGAG---------- 420
Query: 238 GSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESG---SEADK 294
GS D P +S + S G G GGGG+E A+ G + ++A
Sbjct: 421 GSAVDDPLPDYSLPPVTSSSSSSLSHGGGGGGGGGGQEAGHHPAAHQGRLTSWYLNQAGG 480
Query: 295 EEGEAAPAPGLGGGSG-PRQRTPLDILTRVFPGHRRGV 331
+ G A A +G P Q+ + +F R G+
Sbjct: 481 DLGHLASAAAAAAAAGYPGQQQNFHSVREMFESQRIGL 518
Score = 37.0 bits (84), Expect = 0.046
Identities = 79/329 (24%), Positives = 111/329 (33%), Gaps = 36/329 (10%)
Query: 206 PGSPLPPPVKPLSPDGADSGPGTSSPEVR-PGSGSENGDGESFSGSPLARASKEAGGSC- 263
P PPP P DG + PG P VR +ENG S PL+ A+ GS
Sbjct: 196 PPGRQPPPAPPEQADG--NAPGPQPPPVRIQDIKTENGTCPS-PPQPLSPAAALGSGSAA 252
Query: 264 --PGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILT 321
P P S GS+ P S + ++AP P P P
Sbjct: 253 AVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPPP-------PAPSAPP---- 301
Query: 322 RVFPGHRRGV-LELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAAD 380
P H +G ++ ++ G A ++ + AA P A +
Sbjct: 302 ---PHHSQGFSVDNIMTSLRGSPQSAAAELSSGLLASAAASSRAGIAPPLALGAYSPGQS 358
Query: 381 DAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAM-APGALGSLSSRSAFS 439
+ S ++A ++ GG G A +H L A ++ A G G
Sbjct: 359 SLYSSPCSQTSSAGSSGGGGGGAGAAGGAGGAGTYHCNLQAMSLYAAGERG--------G 410
Query: 440 PLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLG--- 496
LQ G A PL L P+ + S++ +H G AG P
Sbjct: 411 HLQGAPGGAGGSAVDDPL-PDYSLPPVTSSSSSSLSHGGGGGGGGGGQEAGHHPAAHQGR 469
Query: 497 -FRPPMDYAFSDLMRDRSAAAAAAVHKEP 524
++ A DL SAAAAAA P
Sbjct: 470 LTSWYLNQAGGDLGHLASAAAAAAAAGYP 498
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 58.5 bits (140), Expect = 1e-08
Identities = 86/302 (28%), Positives = 105/302 (34%), Gaps = 40/302 (13%)
Query: 162 AADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDG 221
A G PGA P G G AG + + ++ G PG L PV P G
Sbjct: 252 AGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEV--------GLPG--LSGPVGPPGNPG 301
Query: 222 ADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGG----GEED 276
A+ G PG +G+ G P+ A G GP G G +
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG 361
Query: 277 SPGSASPLG--SESGSEADK----EEGEAAP--APGLGGGSGPRQRTPLDILTRVF--PG 326
PGSA P G SG E + E G A P PGL G G R D V PG
Sbjct: 362 EPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPG 421
Query: 327 HRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPDKAAVGAAAAADDAWP 384
R ++G GD + E L RG G +GPA + VG D P
Sbjct: 422 SRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAG--KEGPVGLPGI--DGRP 477
Query: 385 SRVDAAAAAAAAAGGPGLPAPLQAGPAAPP------HHRPLLAGAMAPGALGSLSSRSAF 438
+ A A G G P P GP P H L APG G+ ++
Sbjct: 478 GPI-GPAGARGEPGNIGFPGP--KGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPP 534
Query: 439 SP 440
P
Sbjct: 535 GP 536
Score = 54.7 bits (130), Expect = 2e-07
Identities = 83/304 (27%), Positives = 98/304 (32%), Gaps = 46/304 (15%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP--LPPPVK--PLSP 219
G GA PAG G G AG G P + G PGSP + P K P+
Sbjct: 421 GSRGASGPAGVRGPNGDAGRPGE----------PGLMGPRGLPGSPGNIGPAGKEGPVGL 470
Query: 220 DGADSGPGTSSPEVRPGSGSENG--DGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDS 277
G D PG P G G + +G P K G PG G +
Sbjct: 471 PGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA 530
Query: 278 PGSASPLGSESGSEADKEEGEAAPA--PGLGGGSGPRQRTPLDILTRVFPGHRRGVLELV 335
G P G + G E+G P GL G SGP PG R E
Sbjct: 531 QGPPGPQGVQGGK---GEQGPPGPPGFQGLPGPSGPAGEVGK-------PGERGLHGEFG 580
Query: 336 LQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP-------DKAAVGAAAAADDAWPSR 386
L G G + + G G GP+ PP + VGA A + PS
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640
Query: 387 VDAAAAAAAAAGG------PGLPAPLQAGPAAPPHHRPLLAGAMAP-GALGSLSSRSAFS 439
+ AA GG PGL + P GA P GA G A
Sbjct: 641 LPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAG 700
Query: 440 PLQP 443
P P
Sbjct: 701 PAGP 704
Score = 53.9 bits (128), Expect = 4e-07
Identities = 72/251 (28%), Positives = 84/251 (33%), Gaps = 48/251 (19%)
Query: 162 AADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PLSPD 220
A + G PG PAG G A G + + G PG P P + + P
Sbjct: 117 AGEPGEPGQTGPAGARGPAGPPGKAG--------------EDGHPGKPGRPGERGVVGPQ 162
Query: 221 GADSGPGTSSPEVRPGSGSENG-DGESFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSP 278
GA PGT G NG DG G P A K G+ PG G PG G P
Sbjct: 163 GARGFPGTPGLPGFKGIRGHNGLDG--LKGQPGAPGVKGEPGA-PGENGTPGQTGARGLP 219
Query: 279 GSASPLGSESGSEADKEEGEAAPAPGLG--GGSGPRQRTPLDILTRVFPGHRRGVLELVL 336
G +G+ + A +G P G G +GP FPG E+
Sbjct: 220 GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG----------FPGAPGPKGEIGA 269
Query: 337 QGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAA 394
G G A RG GL GP PP A AA
Sbjct: 270 VGNAGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLTGA--------KGAAGLP 315
Query: 395 AAAGGPGLPAP 405
AG PGLP P
Sbjct: 316 GVAGAPGLPGP 326
Score = 48.9 bits (115), Expect = 1e-05
Identities = 77/291 (26%), Positives = 97/291 (33%), Gaps = 63/291 (21%)
Query: 166 GGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQ--AGRPGSPLPP------ 212
GG G P G G G +G G K + L + L AG G PP
Sbjct: 541 GGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAA 600
Query: 213 -PVKPLSPDGADSGPGTSSPEVRPG----------SGSENGDGE-SFSGSPLARASKEAG 260
P P+ G PG + PG SG GE +G P + K
Sbjct: 601 GPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEP 660
Query: 261 GSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDIL 320
G PG G +PG+ +G+ + A + GEA A G G +GPR
Sbjct: 661 GLRGEIGNPGRDGARGAPGA---VGAPGPAGATGDRGEAG-AAGPAGPAGPRGS------ 710
Query: 321 TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG-----------------GLAAGLG 363
PG R V G G A + RG G A G
Sbjct: 711 ----PGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 364 PAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPP 414
P PP G A + D P + AA G PG P+ + +GP PP
Sbjct: 767 PNGPP-----GPAGSRGDGGPPGMTGFPGAAGRTGPPG-PSGI-SGPPGPP 810
Score = 46.6 bits (109), Expect = 6e-05
Identities = 78/298 (26%), Positives = 90/298 (30%), Gaps = 53/298 (17%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G G P G G A AG AK ++ PK G G V P P GA
Sbjct: 715 GEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPK-----GENGV-----VGPTGPVGAAGP 764
Query: 226 PGTSSPEVRPGSGSENGDG--ESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASP 283
G + P PG GDG +G P A G S PG G G P
Sbjct: 765 AGPNGP---PGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGP 821
Query: 284 LGSESGSEADKEEGEAAPAPGLGGGSGPRQRT----------PLDILTRV----FPGHRR 329
G + E G P PG G GP P +L PG R
Sbjct: 822 RGDQGPVGRTGEVGAVGP-PGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRG 880
Query: 330 GVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDA 389
E L G G V G LG A PP GA V+
Sbjct: 881 ---ERGLPGVAGAV-------------GEPGPLGIAGPP-----GARGPPGAVGSPGVNG 919
Query: 390 AAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASH 447
A A G PG P G P H+ G +G+ + P+ P H
Sbjct: 920 APGEAGRDGNPGNDGP--PGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKH 975
Score = 46.2 bits (108), Expect = 8e-05
Identities = 75/284 (26%), Positives = 95/284 (33%), Gaps = 58/284 (20%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G GA P G G G +G G+ AG PG+P P + L G
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGT----------------AGPPGTPGPQGL--LGAPGIL 873
Query: 224 SGPGTSSPEVRPGSGSENGDGE--SFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSA 281
PG+ PG G+ +G P AR A GS + PG G + +PG+
Sbjct: 874 GLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGND 933
Query: 282 SPLGSESGSEADKEEG--------EAAPAPGLGGGSGPRQR----------TPLDILTRV 323
P G + E G AA APG G GP + P+ V
Sbjct: 934 GPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAV 993
Query: 324 FPGHRRGVLELVLQGCGGDVVQAIEQ------VLNHHRG-----GLAAGLG-PAAPPDKA 371
P G QG GD + E+ L H G G+A G AP
Sbjct: 994 GPRGPSGP-----QGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVG 1048
Query: 372 AVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPP 414
G A + P+ D G G+ P GPA PP
Sbjct: 1049 PAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPP 1092
Score = 45.4 bits (106), Expect = 1e-04
Identities = 87/326 (26%), Positives = 108/326 (33%), Gaps = 72/326 (22%)
Query: 204 GRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE-----NGDGESFSGSPLARASKE 258
G G P PP DG PG P PG G +G G P+
Sbjct: 42 GERGPPGPPGRD--GEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPR 99
Query: 259 AGGSCPGSAGPGG----GGEEDSPGSASPLGS--------ESGSEADK-------EEGEA 299
G+ GP G GE PG P G+ ++G + E G
Sbjct: 100 GPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVV 159
Query: 300 AP--------APGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVL 351
P PGL G G R LD L + PG E G G Q + L
Sbjct: 160 GPQGARGFPGTPGLPGFKGIRGHNGLDGL-KGQPGAPGVKGEPGAPGENGTPGQTGARGL 218
Query: 352 NHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL----- 406
RG + A GPA GA + P +A G PG P P
Sbjct: 219 PGERGRVGAP-GPA--------GARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGA 269
Query: 407 --QAGPAAPPHHR-----PLLAGAMA----PGALGSLSSRSAFSPLQPNASHFGADAGAY 455
AGPA P R P L+G + PGA G ++ A+ AGA
Sbjct: 270 VGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAK--------GAAGLPGVAGAP 321
Query: 456 PLGAPLGL-SPLRLAYSAAAAHSRGL 480
L P G+ P+ +A A +RGL
Sbjct: 322 GLPGPRGIPGPVG---AAGATGARGL 344
Score = 32.3 bits (72), Expect = 1.1
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDG 221
D G PG+ PAG G G +G G + + G PG+ P ++ P G
Sbjct: 1040 DQGAPGSVGPAGPRGPAGPSGPAGKDGR-------------TGHPGTVGPAGIR--GPQG 1084
Query: 222 ADSGPGTSSPEVRPGSGSENGDGESF 247
G P PG +G G F
Sbjct: 1085 HQGPAGPPGPPGPPGPPGVSGGGYDF 1110
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 57.4 bits (137), Expect = 3e-08
Identities = 82/311 (26%), Positives = 99/311 (31%), Gaps = 44/311 (14%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG P G G G + L G+PG PP + G
Sbjct: 83 GKPGPRGPPGPPGFPGKPGMGKPGLH------------GQPGPAGPPGFSRMGKAGPPGL 130
Query: 226 PGTSSPEVRPGSGSENG--DGESFSGSPLARASKEAGG-SCPGSAG-------PGGGGEE 275
PG P +PG E G + G P G + PG G PG GE
Sbjct: 131 PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP 190
Query: 276 DSPGSASPLGSESGSEADKEEGEAA--PAPGLGGGSGPRQRT-PLDILTRVFPGHRRGVL 332
G P G + G + D G+ APG GG GP P + G
Sbjct: 191 GPQGEPGPPG-DRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDG------ 243
Query: 333 ELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAA 392
L G GD ++ + RG A +GP PP VG AA P A
Sbjct: 244 ---LPGAPGDKGESGPPGVPGPRGEPGA-VGPKGPPGVDGVGVPGAAGLPGPQGPSGAKG 299
Query: 393 AAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADA 452
G PGL P G P + A PG LG +P +
Sbjct: 300 EPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRG--------EPGEDGEPGEQ 351
Query: 453 GAYPLGAPLGL 463
G LG P GL
Sbjct: 352 GPQGLGGPPGL 362
Score = 47.0 bits (110), Expect = 4e-05
Identities = 69/255 (27%), Positives = 84/255 (32%), Gaps = 27/255 (10%)
Query: 166 GGPGAGAPAG----TGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDG 221
G PG P G TG G G G + + P L G PG P + P G
Sbjct: 299 GEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGV-PGLLGDRGEPGEDGEPGEQ--GPQG 355
Query: 222 ADSGPGTSSPEVRPGS-GSENGDGESFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPG 279
PG PG G GE+ G P G AG PG GE PG
Sbjct: 356 LGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPG 415
Query: 280 SASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGC 339
+ P G +G + + PG+ G G + D+ PG R LQG
Sbjct: 416 AHGPPGP-TGPKGEPGFTGRPGGPGVAGALGQKG----DLGLPGQPGLRGPSGIPGLQGP 470
Query: 340 GGDV-VQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAG 398
G + Q + GL G PP + G A P V + G
Sbjct: 471 AGPIGPQGLP--------GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG 522
Query: 399 GPGLPAPLQAGPAAP 413
PG P P P AP
Sbjct: 523 PPGPPGP----PGAP 533
Score = 34.7 bits (78), Expect = 0.23
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP------LPPPVKPL 217
G PG P+G G G AG G + P + G PG P P P
Sbjct: 454 GQPGLRGPSGIPGLQGPAGPIGPQG-------LPGLKGEPGLPGPPGEGRAGEPGTAGPT 506
Query: 218 SPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGG 271
P G PG + P PG G +F + +A GG G GG
Sbjct: 507 GPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGG 560
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 55.8 bits (133), Expect = 1e-07
Identities = 119/426 (27%), Positives = 154/426 (36%), Gaps = 56/426 (13%)
Query: 138 GLALAAANGIIPPRPAYEVFGSVCAADGGG---PGAGAPAGTGGGAAGAGGSEAKLQKFD 194
G+ L + + P RP V G++ GG PGAG A GGGA G GG K
Sbjct: 12 GVLLLLLSILHPSRPG-GVPGAIPGGVPGGVFYPGAGLGA-LGGGALGPGGKPLKPVPGG 69
Query: 195 LFPKTLLQAGRPGSPLPPPVKPLSPDG-ADSGPGTSSPEVRPGSGSENGDGESFSGSPLA 253
L L AG P L P G AD+ + + G G G G +
Sbjct: 70 LAGAGL-GAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAV 128
Query: 254 RASKEAG---GSCPGSAGPGGGGEEDSPGS---------ASPLGSESGSEADKEEGEAAP 301
AG G PG PG PG+ P G+ +A G A
Sbjct: 129 VPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGGAFAG 188
Query: 302 APGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAG 361
PG+G GP+ PL +P + L G G + + GG+A
Sbjct: 189 IPGVGPFGGPQPGVPLG-----YP-----IKAPKLPGGYGLPYTTGKLPYGYGPGGVAGA 238
Query: 362 LGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPG----LPAPLQAGPAAPPHHR 417
G A P VG AAA AAAA AAA G G LP AG P
Sbjct: 239 AGKAGYPTGTGVGPQAAA---------AAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAI 289
Query: 418 PLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHS 477
P + G G + ++ +A + A+ +GA AG P G P G P + A
Sbjct: 290 PGIGGIAGVGTPAAAAAAAAAA----KAAKYGAAAGLVP-GGP-GFGPGVVGVPGAGVPG 343
Query: 478 RGLAFMAPYSTAGLVPTLGF-RPPMDYAFSDLMRDRSAAAAAAVHKEPTYG-GGL--YGP 533
G+ P + +VP G + S ++AA AA P G GG+ YG
Sbjct: 344 VGV----PGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGV 399
Query: 534 MVNGAP 539
G P
Sbjct: 400 GAGGFP 405
Score = 48.1 bits (113), Expect = 2e-05
Identities = 126/481 (26%), Positives = 158/481 (32%), Gaps = 95/481 (19%)
Query: 7 LPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPR 66
+P VPGA A V + A+ AAAAAAA + A GL+ G P P
Sbjct: 282 VPGVPGAIPGIGGIAG---VGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPG 338
Query: 67 TPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEA 126
A GV A ++ AA + +A + A
Sbjct: 339 ----AGVPGVGVPG----------------AGIPVVPGAGIPGAAVPGVVSPEAAAKAAA 378
Query: 127 RELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTG----GGAAG 182
+ + YG G+ + P Y V G G G G P G GG G
Sbjct: 379 KAAK--YGARPGVGVGGI-------PTYGVGAGGFPGFGVGVG-GIPGVAGVPGVGGVPG 428
Query: 183 AGG-------------SEAKLQKFDLFPKTLLQAG---RPGSPLPPPVKPLSPDGADSGP 226
GG + AK K+ L P + G PG + P V L+P G P
Sbjct: 429 VGGVPGVGISPEAQAAAAAKAAKYGLVPGVGVAPGVGVAPGVGVAPGV-GLAP-GVGVAP 486
Query: 227 GTSSPEVRPGSGSENGDGESFSGSPLARASKEAG-GSCPGSAGPGGGGEEDSPGSASP-L 284
G V PG G G G + A+K A +AG G G G P L
Sbjct: 487 GVG---VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGL 543
Query: 285 GSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVV 344
G +G G A PG G G PG G+ L G G VV
Sbjct: 544 GVGAGVPG---LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVV 600
Query: 345 QAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA 404
G GPAA AA A AAA A V AA GG G+P
Sbjct: 601 ----------------GAGPAA----AAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPG 640
Query: 405 -------PLQAGPAAPPHHRPLLAGAMAPGA---LGSLSSRSAF--SPLQPNASHFGADA 452
P A A + L G + LG +++R F SP+ P + G
Sbjct: 641 VGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPLGGVAARPGFGLSPIFPGGACLGKAC 700
Query: 453 G 453
G
Sbjct: 701 G 701
Score = 47.8 bits (112), Expect = 3e-05
Identities = 115/429 (26%), Positives = 146/429 (34%), Gaps = 102/429 (23%)
Query: 136 AEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDL 195
A+ AA G++P P + G V G PGAG P G G GAG +
Sbjct: 311 AKAAKYGAAAGLVPGGPGFGP-GVV-----GVPGAGVP---GVGVPGAG--------IPV 353
Query: 196 FPKTLLQAGRPGSPLPPPVKP---------LSPDGADSGPGTSS-PEVRPGSGSENGDGE 245
P AG PG+ +P V P + GA G G P G+G G G
Sbjct: 354 VPG----AGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGV 409
Query: 246 SFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPG 304
G P GG PG G PG G ++ +A+ ++ G P G
Sbjct: 410 GVGGIPGVAGVPGVGG-VPGVGGVPGVGISPEAQAAAAAKAAKYG---------LVPGVG 459
Query: 305 LGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGP 364
+ G G V PG GV V G V + G+A G+G
Sbjct: 460 VAPGVG------------VAPGV--GVAPGVGLAPGVGVAPGV---------GVAPGVGV 496
Query: 365 AAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA-----PLQAGPAAPPHHRPL 419
A V AAA + ++ AAA AG PGL L G P L
Sbjct: 497 APGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVP----GL 552
Query: 420 LAGA------MAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAA 473
GA PGAL + + + + GA G G +G P A +A
Sbjct: 553 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAK 612
Query: 474 AAHSR------GLAFMAPYSTAGL----VPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKE 523
AA G A + GL V LG PP +AAA AA +
Sbjct: 613 AAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPP------------AAAAKAAKYGA 660
Query: 524 PTYGGGLYG 532
GG L G
Sbjct: 661 AGLGGVLGG 669
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 55.8 bits (133), Expect = 1e-07
Identities = 119/426 (27%), Positives = 154/426 (36%), Gaps = 56/426 (13%)
Query: 138 GLALAAANGIIPPRPAYEVFGSVCAADGGG---PGAGAPAGTGGGAAGAGGSEAKLQKFD 194
G+ L + + P RP V G++ GG PGAG A GGGA G GG K
Sbjct: 12 GVLLLLLSILHPSRPG-GVPGAIPGGVPGGVFYPGAGLGA-LGGGALGPGGKPLKPVPGG 69
Query: 195 LFPKTLLQAGRPGSPLPPPVKPLSPDG-ADSGPGTSSPEVRPGSGSENGDGESFSGSPLA 253
L L AG P L P G AD+ + + G G G G +
Sbjct: 70 LAGAGL-GAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAV 128
Query: 254 RASKEAG---GSCPGSAGPGGGGEEDSPGS---------ASPLGSESGSEADKEEGEAAP 301
AG G PG PG PG+ P G+ +A G A
Sbjct: 129 VPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGGAFAG 188
Query: 302 APGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAG 361
PG+G GP+ PL +P + L G G + + GG+A
Sbjct: 189 IPGVGPFGGPQPGVPLG-----YP-----IKAPKLPGGYGLPYTTGKLPYGYGPGGVAGA 238
Query: 362 LGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPG----LPAPLQAGPAAPPHHR 417
G A P VG AAA AAAA AAA G G LP AG P
Sbjct: 239 AGKAGYPTGTGVGPQAAA---------AAAAKAAAKFGAGAAGVLPGVGGAGVPGVPGAI 289
Query: 418 PLLAGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHS 477
P + G G + ++ +A + A+ +GA AG P G P G P + A
Sbjct: 290 PGIGGIAGVGTPAAAAAAAAAA----KAAKYGAAAGLVP-GGP-GFGPGVVGVPGAGVPG 343
Query: 478 RGLAFMAPYSTAGLVPTLGF-RPPMDYAFSDLMRDRSAAAAAAVHKEPTYG-GGL--YGP 533
G+ P + +VP G + S ++AA AA P G GG+ YG
Sbjct: 344 VGV----PGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGV 399
Query: 534 MVNGAP 539
G P
Sbjct: 400 GAGGFP 405
Score = 50.4 bits (119), Expect = 4e-06
Identities = 91/319 (28%), Positives = 109/319 (34%), Gaps = 58/319 (18%)
Query: 165 GGGPGAG-------------APAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAG---RPGS 208
GG PG G A G G AA A + AK +F L P + G PG
Sbjct: 430 GGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGV 489
Query: 209 PLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAG-GSCPGSA 267
+ P V L+P G PG V PG G G G + A+K A +A
Sbjct: 490 GVAPGV-GLAP-GVGVAPGVG---VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAA 544
Query: 268 GPGGGGEEDSPGSASP-LGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPG 326
G G G G P LG +G G A PG G G PG
Sbjct: 545 GLGAGIPGLGVGVGVPGLGVGAGVPG---LGVGAGVPGFGAVPGALAAAKAAKYGAAVPG 601
Query: 327 HRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSR 386
G+ L G G VV G GPAA AA A AAA A
Sbjct: 602 VLGGLGALGGVGIPGGVV----------------GAGPAA----AAAAAKAAAKAAQFGL 641
Query: 387 VDAAAAAAAAAGGPGLPA-------PLQAGPAAPPHHRPLLAGAMAPGA---LGSLSSRS 436
V AA GG G+P P A A + L G + LG +++R
Sbjct: 642 VGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPLGGVAARP 701
Query: 437 AF--SPLQPNASHFGADAG 453
F SP+ P + G G
Sbjct: 702 GFGLSPIFPGGACLGKACG 720
Score = 50.1 bits (118), Expect = 5e-06
Identities = 119/437 (27%), Positives = 152/437 (34%), Gaps = 99/437 (22%)
Query: 136 AEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDL 195
A+ AA G++P P + G V G PGAG P G G GAG +
Sbjct: 311 AKAAKYGAAAGLVPGGPGFGP-GVV-----GVPGAGVP---GVGVPGAG--------IPV 353
Query: 196 FPKTLLQAGRPGSPLPPPVKP---------LSPDGADSGPGTSS-PEVRPGSGSENGDGE 245
P AG PG+ +P V P + GA G G P G+G G G
Sbjct: 354 VPG----AGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGV 409
Query: 246 SFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGSASPLGSESG-----SEADKEEGEA 299
G P GG PG G PG G ++ +A+ ++ G + A K +A
Sbjct: 410 GVGGIPGVAGVPGVGG-VPGVGGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKA 468
Query: 300 AP---APGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG 356
A PG+G G V PG GV V G V +
Sbjct: 469 AQFGLVPGVGVAPG----------VGVAPGV--GVAPGVGLAPGVGVAPGV--------- 507
Query: 357 GLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPA-----PLQAGPA 411
G+A G+G A V AAA + ++ AAA AG PGL L G
Sbjct: 508 GVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAG 567
Query: 412 APPHHRPLLAGA------MAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSP 465
P L GA PGAL + + + + GA G G +G P
Sbjct: 568 VP----GLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGP 623
Query: 466 LRLAYSAAAAHSR------GLAFMAPYSTAGL----VPTLGFRPPMDYAFSDLMRDRSAA 515
A +A AA G A + GL V LG PP +AA
Sbjct: 624 AAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPP------------AAA 671
Query: 516 AAAAVHKEPTYGGGLYG 532
A AA + GG L G
Sbjct: 672 AKAAKYGAAGLGGVLGG 688
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 55.8 bits (133), Expect = 1e-07
Identities = 77/293 (26%), Positives = 93/293 (31%), Gaps = 68/293 (23%)
Query: 162 AADGGGPGAGAPAGTGG-----------------GAAGAGGSEAKLQKFDLFPKTLLQAG 204
A + G PG P G G G+ G GS+ K P + ++G
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP----PGSQGESG 561
Query: 205 RPGSPLPPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSC 263
RPG P P P G PG + PG +G G G P + +
Sbjct: 562 RPGPP--GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP 619
Query: 264 PGSAGPGGG----------GEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSG--- 310
PG GPGG G + PG+ P G E+G + A APG GG G
Sbjct: 620 PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG-ENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 311 -PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPD 369
P +R P + PG R G G G GG A GP PP
Sbjct: 679 APGERGPPGLAGA--PGLRGGA------GPPGP------------EGGKGAA-GPPGPPG 717
Query: 370 KAAV-------GAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPP 414
A G P A G PG P GP PP
Sbjct: 718 AAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Score = 54.7 bits (130), Expect = 2e-07
Identities = 87/322 (27%), Positives = 108/322 (33%), Gaps = 64/322 (19%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP----LPPPVKPLSP 219
G PG P+G G GA G G K ++GRPG P LP P P
Sbjct: 204 GEPGQAGPSGPPGPPGAIGPSGPAGKDG----------ESGRPGRPGERGLPGPPGIKGP 253
Query: 220 DGADSGPGTSSPEVRPGSGSENGD-------GESF----SGSPLARASKEAGGS-----C 263
G PG G E G+ GE+ +G+P + A G
Sbjct: 254 AGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGL 313
Query: 264 PGSAGPGGG----GEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDI 319
PG+AG G G + PG P G+ + +GE PA G P QR
Sbjct: 314 PGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE--- 370
Query: 320 LTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAA 379
PG QG G +N GG +GPA P A G A
Sbjct: 371 -----PGP---------QGHAGAQGPPGPPGINGSPGG-KGEMGPAGIP--GAPGLMGAR 413
Query: 380 DDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSA-F 438
P+ + A AG PG + G P R A PG G+
Sbjct: 414 GPPGPAGANGAPGLRGGAGEPG-----KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDG 468
Query: 439 SPLQPNASHFGADAGAYPLGAP 460
SP +P A+ G A GAP
Sbjct: 469 SPGEPGAN--GLPGAAGERGAP 488
Score = 53.5 bits (127), Expect = 5e-07
Identities = 83/312 (26%), Positives = 101/312 (32%), Gaps = 69/312 (22%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLS----- 218
G PGA P G G GA G G G GSP P VK S
Sbjct: 939 GPPGAPGPLGIAGITGARGLAGPPG-------------MPGPRGSPGPQGVKGESGKPGA 985
Query: 219 --------PDGADSGPGTSSPEVRPG-SGSENGDG-ESFSGSPLARASKEAGGSCPGSAG 268
P G PG + PG G+ DG GSP + + GS
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGS------ 1039
Query: 269 PGGGGEEDSPGSASPLGSESGSEADKEEGEAAPA--------PGLGGGSGPR-------Q 313
PG G PG P+G S E G A PA G G GPR +
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE 1099
Query: 314 RTPLDIL-TRVFPGHRRGVLELVLQGCGGDVVQAIEQ--VLNHHRGGLAAGLGPAAPPDK 370
R I R FPG+ G G A +Q + + G +GP+ PP K
Sbjct: 1100 RGAAGIKGHRGFPGN---------PGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Query: 371 AAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALG 430
G + P + G PG P Q GP PP G + A+
Sbjct: 1151 D--GTSGHPGPIGPPGPRGNRGERGSEGSPGHPG--QPGPPGPPGAPGPCCGGVGAAAIA 1206
Query: 431 SLSSRSA--FSP 440
+ A F+P
Sbjct: 1207 GIGGEKAGGFAP 1218
Score = 53.1 bits (126), Expect = 6e-07
Identities = 79/284 (27%), Positives = 96/284 (33%), Gaps = 52/284 (18%)
Query: 162 AADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSP 219
A G PG PAG G G AG G+ + + D P G PGSP P
Sbjct: 494 AGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR-DGVPGGPGMRGMPGSPGGP-----GS 547
Query: 220 DGADSGPGTSSPEVRPGSGSENGDG--ESFSGSPLARASKEAGGSCPGSAGPGGGGEEDS 277
DG PG+ RPG +G G P + + A G GPGG G +
Sbjct: 548 DGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP 607
Query: 278 PGS---ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLEL 334
PG P G + ++G+ P PG G G
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGP-PGPQGLQG------------------------ 642
Query: 335 VLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAA 394
L G GG + + +G A P AP K G A A + P + A A
Sbjct: 643 -LPGTGGPPGENGKPGEPGPKGDAGA---PGAPGGK---GDAGAPGERGPPGL---AGAP 692
Query: 395 AAAGGPGLPAPLQAGPAAPPHHRPLLAGAMA----PGALGSLSS 434
GG G P P AA P P AG PG G L S
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS 736
Score = 53.1 bits (126), Expect = 6e-07
Identities = 93/339 (27%), Positives = 109/339 (32%), Gaps = 61/339 (17%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
PP PA + G PG P G+ G G G G FP Q G P
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAG-------FPGAPGQNGEP 821
Query: 207 GSP----LPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGD-----GESFSGSPLARASK 257
G P P G PG S P PG G+ G +G P AR
Sbjct: 822 GGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP 881
Query: 258 EAGGS--CPGSAGPGGG-GEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSG---- 310
GS PG GP G G++ PG A G+ +G+A PG G G
Sbjct: 882 GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAG-QPGEKGSPGAQGP 940
Query: 311 PRQRTPLDILTRV----------FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG---- 356
P PL I PG R QG G+ + L+ RG
Sbjct: 941 PGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP---QGVKGESGKPGANGLSGERGPPGP 997
Query: 357 -GLAAGLGPAAPPDKAAVGAAAAADDAWPSR-----------VDAAAAAAAAAGGPGLPA 404
GL G A P + D P R + + A A G PG P
Sbjct: 998 QGLPGLAGTAGEPGR----DGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG 1053
Query: 405 PLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQP 443
P+ GPA R A GA G SR A P P
Sbjct: 1054 PV--GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Score = 50.1 bits (118), Expect = 5e-06
Identities = 76/300 (25%), Positives = 96/300 (32%), Gaps = 74/300 (24%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
GGPGA G G G G G + P + G PG LP P G
Sbjct: 747 GGPGADGVPGKDGPRGPTGPIGPPGPAGQ----PGDKGEGGAPG--LPGIAGPRGSPGER 800
Query: 224 SGPGTSSPEVRPGSGSENGD--GESFSGSPLARASKEAGGSCPGSAGPGGG--------- 272
G P PG+ +NG+ G+ G+P ++ G PG AGP GG
Sbjct: 801 GETGPPGPAGFPGAPGQNGEPGGKGERGAP----GEKGEGGPPGVAGPPGGSGPAGPPGP 856
Query: 273 ----GEEDSPG--------SASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDIL 320
GE SPG A L GS + + +PG G GP T
Sbjct: 857 QGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGA--- 913
Query: 321 TRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAAD 380
PG + G GD Q P +K + GA
Sbjct: 914 ----PGSPG------VSGPKGDAGQ---------------------PGEKGSPGAQGPPG 942
Query: 381 DAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSP 440
P + A AG PG+P GP P + + + PGA G R P
Sbjct: 943 APGPLGIAGITGARGLAGPPGMP-----GPRGSPGPQGVKGESGKPGANGLSGERGPPGP 997
Score = 47.8 bits (112), Expect = 3e-05
Identities = 74/280 (26%), Positives = 90/280 (32%), Gaps = 59/280 (21%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSP-LPPPVKPLSPDGA 222
G PG AG G G G GS K ++ P AG PG+P L P P GA
Sbjct: 369 GEPGPQGHAGAQGPPGPPGINGSPGG--KGEMGP-----AGIPGAPGLMGARGPPGPAGA 421
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAG-------------- 268
+ PG +R G+G +G P + PG+ G
Sbjct: 422 NGAPG-----LRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476
Query: 269 --PGGGGEEDSPGSASPLGSESGSEADK----EEGEAAPAPGLGGGSGP-RQRTPLDILT 321
PG GE +PG P G +G +K E G PA G P R P
Sbjct: 477 GLPGAAGERGAPGFRGPAG-PNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM 535
Query: 322 RVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADD 381
R PG G G G + G GP+ P + V
Sbjct: 536 RGMPGSPGGPGSDGKPGPPG----------SQGESGRPGPPGPSGPRGQPGVMGFPG--- 582
Query: 382 AWPSRVDAAAAAAAAAGGPGLPAPL-------QAGPAAPP 414
P D A GGPG P P + GP PP
Sbjct: 583 --PKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Score = 47.0 bits (110), Expect = 4e-05
Identities = 86/323 (26%), Positives = 105/323 (32%), Gaps = 37/323 (11%)
Query: 157 FGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAK--LQKFDLFPKTLLQAGRPGSPLPPPV 214
FG CA P A G G G G + + P Q G PGSP PP +
Sbjct: 81 FGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGI 140
Query: 215 KPLSPDGADS-GPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAG-PGGG 272
P G + P S +V+ G G P PGS G PG
Sbjct: 141 CESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQ 200
Query: 273 GEEDSPGSASPLG--------SESGSEADKEEGEAAPAPGLGGGSGPRQ-RTPLDILTRV 323
G PG A P G SG E PG G GP + P I
Sbjct: 201 GPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGI--PG 258
Query: 324 FPGHR--RGVLELVLQGCGGDVVQAIEQVLNHHRG-----GLAAGLGP-AAPPDKAAVGA 375
FPG + RG G G+ + L G G +GP AP ++ G
Sbjct: 259 FPGMKGHRG-----FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGL 313
Query: 376 AAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSR 435
AA D A + G PG P AG P + + A +PG+ G+ R
Sbjct: 314 PGAAG---ARGNDGARGSDGQPGPPGPPG--TAGFPGSPGAKGEVGPAGSPGSNGAPGQR 368
Query: 436 SAFSPLQPNASHFGADAGAYPLG 458
P H GA P G
Sbjct: 369 GEPGP----QGHAGAQGPPGPPG 387
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/156 (30%), Positives = 54/156 (34%), Gaps = 34/156 (21%)
Query: 162 AADGGGPGAGAPAGTGG-----GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKP 216
A G PG P G G GAAG G FP G PG+P P P
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGERGAAGIKGHRG-------FP------GNPGAPGSPG--P 1123
Query: 217 LSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLA----RASKEAGGSCPGSAGPGG 271
GA PG + P G SG DG S P+ R ++ GS PG
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQ 1183
Query: 272 GGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGG 307
G PG+ P G AA G+GG
Sbjct: 1184 PGPPGPPGAPGPCCGGVG---------AAAIAGIGG 1210
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 55.8 bits (133), Expect = 1e-07
Identities = 78/286 (27%), Positives = 92/286 (32%), Gaps = 42/286 (14%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAK--LQKFDLFPKTLLQAGRPGSPLPP----PVK 215
D G PG G G G G G E K LQ P + G PG P P P
Sbjct: 2139 DRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAG 2198
Query: 216 PLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEE 275
P P G PG + P PG G G P + PG PG GE
Sbjct: 2199 PQGPSGLKGEPGETGP---PGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGL--PGQVGET 2253
Query: 276 DSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELV 335
PG+ G+ SG + D+ +PGL G GP+ P G +
Sbjct: 2254 GKPGAPGRDGA-SGKDGDRGSPGVPGSPGLPGPVGPKGEPG--------PTGAPGQAVVG 2304
Query: 336 LQGCGGDVVQAIEQVLNHHRGGLAAGLG-----------PAAPPDKAAVGAAAAADDAWP 384
L G G+ GGLA L P +K G A D
Sbjct: 2305 LPGAKGE---------KGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGE 2355
Query: 385 SRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALG 430
A G PG+ P GP PP + L PGA G
Sbjct: 2356 DGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPG 2401
Score = 51.6 bits (122), Expect = 2e-06
Identities = 85/328 (25%), Positives = 101/328 (30%), Gaps = 87/328 (26%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK---------- 215
G GA P G G A G E D P + +AG PG+P P +K
Sbjct: 1278 GRTGAPGPQGPPGSATAKG--ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRG 1335
Query: 216 ------PLSPDGADSGPGTSSPEVRPGSGSENGD----GESFSGSPLARASKEAGGSCPG 265
P P G PG PG GD G PL PG
Sbjct: 1336 DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPG 1395
Query: 266 SA--------------GPGGG----------GEEDSPGSASPLG--SESGSEADKEEGEA 299
+A GPG G G SPG P+G + G + D E+G
Sbjct: 1396 TAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDG-- 1453
Query: 300 APAPGLGGGSG-PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG-- 356
APGL G G P ++ P + P RG G G+ + E+ G
Sbjct: 1454 --APGLPGQPGSPGEQGPRGPPGAIGPKGDRG-----FPGPLGEAGEKGERGPPGPAGSR 1506
Query: 357 ------GLAAGLGPAAPP----------------DKAAVGAAAAA-----DDAWPSRVDA 389
G GP PP D A VG A A D P+
Sbjct: 1507 GLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRG 1566
Query: 390 AAAAAAAAGGPGLPAPLQAGPAAPPHHR 417
A G PGL P GP P R
Sbjct: 1567 ATGVQGERGPPGLVLPGDPGPKGDPGDR 1594
Score = 50.1 bits (118), Expect = 5e-06
Identities = 72/269 (26%), Positives = 88/269 (32%), Gaps = 42/269 (15%)
Query: 202 QAGRPGSP-LPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAG 260
Q G PG L V P G G P+ PGS + G+ G P A +
Sbjct: 1255 QKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGE----RGFPGADGRPGSP 1310
Query: 261 GSCPGSAGPGGGGEEDSPGSASPLG--SESGSEADKEE---------GEAAPAPGLGGGS 309
G PG G + SPG P G E G K E GE PG G
Sbjct: 1311 GRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDP 1370
Query: 310 GPR----QRTPLDILTRVFPGHR--RGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLG 363
GP R PL PG R G+ ++G GD RG G G
Sbjct: 1371 GPSGPPGPRGPLG-----DPGPRGPPGLPGTAMKGDKGD---------RGERGPPGPGEG 1416
Query: 364 PAAPPDKAAVGAAAAADDAWP-----SRVDAAAAAAAAAGGPGLP-APLQAGPAAPPHHR 417
AP + G + P + + + A G PG P +P + GP PP
Sbjct: 1417 GIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAI 1476
Query: 418 PLLAGAMAPGALGSLSSRSAFSPLQPNAS 446
PG LG + P P S
Sbjct: 1477 GPKGDRGFPGPLGEAGEKGERGPPGPAGS 1505
Score = 50.1 bits (118), Expect = 5e-06
Identities = 46/148 (31%), Positives = 56/148 (37%), Gaps = 23/148 (15%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PGA P+G G AAG G + D P + G PG P PP P P G D
Sbjct: 1785 GKPGAAGPSGPNG-AAGKAGDPGR----DGLPGLRGEQGLPG-PSGPPGLPGKP-GEDGK 1837
Query: 226 PGTSSPEVRPGSGSENG-DGESFSGSPLARASKE-------AGG--------SCPGSAGP 269
PG + PG E+G GE R ++ A G PG GP
Sbjct: 1838 PGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGP 1897
Query: 270 GGGGEEDSPGSASPLGSESGSEADKEEG 297
G G PG P G + + E+G
Sbjct: 1898 PGQGFPGVPGGTGPKGDRGETGSKGEQG 1925
Score = 48.1 bits (113), Expect = 2e-05
Identities = 95/347 (27%), Positives = 113/347 (32%), Gaps = 65/347 (18%)
Query: 166 GGPGAGAPAGTGG--------GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPL 217
G PG P G G G AG G E P L G PGS PP L
Sbjct: 2404 GFPGQTGPRGEMGQPGPSGERGLAGPPGREG-------IPGPLGPPGPPGSVGPPGASGL 2456
Query: 218 SPDGADSG---PGTSSPEVRPGSGSENG-----DGESFSGSPLARASKEAGGSCPGSAGP 269
D D G PG PG E+G +G P +R + G GSAG
Sbjct: 2457 KGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDV-GSAGL 2515
Query: 270 GGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPR--QRTPLDILTRVFPGH 327
G D SA LG A + GE P GL G GPR P D ++ PG
Sbjct: 2516 KG----DKGDSAVILGPPGPRGAKGDMGERGPR-GLDGDKGPRGDNGDPGDKGSKGEPGD 2570
Query: 328 R--------RGVL----ELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPPDKAAV 373
+ RG+L + G GD + + RG G +GP + V
Sbjct: 2571 KGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGV 2630
Query: 374 GAAAAAD-------DAWPSRVDAAAAAAAAAGGPGLP----APLQAGPAAPPHHRPLLAG 422
A D +A P A G PG+P AP + G P R
Sbjct: 2631 KGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQ 2690
Query: 423 AMAPGALGSLSSRSAFSPLQPNASHF----GADAGAYPLGAPLGLSP 465
G G R P F G D A P G P + P
Sbjct: 2691 PGPKGDQGEKGERGT-----PGIGGFPGPSGNDGSAGPPGPPGSVGP 2732
Score = 46.6 bits (109), Expect = 6e-05
Identities = 71/265 (26%), Positives = 90/265 (33%), Gaps = 26/265 (9%)
Query: 162 AADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLL----QAGRPGSPLPPPVKPL 217
A + G G PAG+ G AG AK + P + GRPG P
Sbjct: 1491 AGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVA 1550
Query: 218 SPDGADSGPGTSSPEVRPGSGSENGD-GESFSGSPLARASKEAGGSC--------PGSAG 268
P G G + P G E G G G P + G PG +G
Sbjct: 1551 GPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSG 1610
Query: 269 PGGG-GEEDSPGSASPLGSESGSEADKEEGEAAPA--PGLGGGSGPRQRTPLDILTRVFP 325
P G G+ PG P+G E+G+ P PGL G +G R R P
Sbjct: 1611 PPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERG-------LRGAP 1663
Query: 326 GHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPS 385
G R V E QG G+ + + +G GP PP + A + P
Sbjct: 1664 GVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP-GPPGPPGRLVDTGPGAREKGEPG 1722
Query: 386 RVDAAAAAAAAAGGPGLP-APLQAG 409
G PGLP AP + G
Sbjct: 1723 D-RGQEGPRGPKGDPGLPGAPGERG 1746
Score = 43.5 bits (101), Expect = 5e-04
Identities = 48/180 (26%), Positives = 57/180 (31%), Gaps = 40/180 (22%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPP-PVKPLSPDGADS 224
G PG P G G A G G FP L +AG G PP P G
Sbjct: 1462 GSPGEQGPRGPPG-AIGPKGDRG-------FPGPLGEAGEKGERGPPGPAGSRGLPGVAG 1513
Query: 225 GPGTSSPEVRPGSGSENGD------------------------GESFSGSPLARASKEAG 260
PG PE PG G+ G+ P +
Sbjct: 1514 RPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGE 1573
Query: 261 GSCPGSAGPGGGGEEDSPGSASPLG--SESGSEADK----EEGEAAPAPGLGGGSGPRQR 314
PG PG G + PG P+G +G D E+G+ PG G GPR R
Sbjct: 1574 RGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPG-RPGPPGPVGPRGR 1632
Score = 43.5 bits (101), Expect = 5e-04
Identities = 88/345 (25%), Positives = 109/345 (31%), Gaps = 61/345 (17%)
Query: 138 GLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFP 197
GLAL PP P S A + G PG G GG AG + ++ +
Sbjct: 2018 GLALGERG---PPGP------SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGE 2068
Query: 198 KTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGES-FSGSPLARAS 256
+ + GR G P G PG P S E G G S G P + +
Sbjct: 2069 RG--EQGRDGPP-----------GLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGA 2115
Query: 257 KEAGGSCPGSAGPGGG----GEEDSPGSASPLGSESGSEADKEEGEAAP--APGLGGGSG 310
K GS G GP G G + G P G + E G A P PGL G G
Sbjct: 2116 KGEPGS-NGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRG 2174
Query: 311 PRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDK 370
P PG G + G G A Q GL G PP +
Sbjct: 2175 P-------------PGPVGGHGDPGPPGAPGLAGPAGPQ----GPSGLKGEPGETGPPGR 2217
Query: 371 AAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLP----------APLQAGPAAPPHHRPLL 420
G A P + G PGLP AP + G + R
Sbjct: 2218 GLTGPTGAVGLPGP---PGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSP 2274
Query: 421 AGAMAPGALGSLSSRSAFSPL-QPNASHFGADAGAYPLGAPLGLS 464
+PG G + + P P + G GAP GL+
Sbjct: 2275 GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLA 2319
Score = 41.2 bits (95), Expect = 0.002
Identities = 49/171 (28%), Positives = 57/171 (33%), Gaps = 40/171 (23%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDG 221
D G PGA G G G G G P AG G PP + S G
Sbjct: 1735 DPGLPGAPGERGIEGFRGPPGPQGD----------PGVRGPAGEKGDRGPPGLDGRS--G 1782
Query: 222 ADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGP------------ 269
D PG + P G+ + GD G P R + PG +GP
Sbjct: 1783 LDGKPGAAGPSGPNGAAGKAGD-PGRDGLPGLRGEQ----GLPGPSGPPGLPGKPGEDGK 1837
Query: 270 ----GGGGEEDSPGSASPLGSESGSEADKEEGEAAP-----APGLGGGSGP 311
G GE PG G + S A EG P APG+ G GP
Sbjct: 1838 PGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGP 1888
Score = 40.0 bits (92), Expect = 0.005
Identities = 68/258 (26%), Positives = 81/258 (31%), Gaps = 29/258 (11%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PG P G G G PK G PG P PP D+G
Sbjct: 1661 GAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKG--DRGEPGPPGPPGRL------VDTG 1712
Query: 226 PGT---SSPEVRPGSGSENGDGE-SFSGSPLARASKEAGGSCPGSAG-PGGGGEEDSPGS 280
PG P R G G+ G+P R + G PG G PG G G
Sbjct: 1713 PGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGP-PGPQGDPGVRGPAGEKGD 1771
Query: 281 ASPLGSESGSEADKEEGEAAPA--PGLGGGSGPRQRTPLDIL--TRVFPGHRRGVLELVL 336
P G + S D + G A P+ G G +G R L L + PG
Sbjct: 1772 RGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGP------ 1825
Query: 337 QGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAA 396
G G + + LN G +K GA+ P A
Sbjct: 1826 PGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGP 1885
Query: 397 AGGPGLPAPLQAGPAAPP 414
G PGLP GP PP
Sbjct: 1886 QGPPGLP-----GPVGPP 1898
Score = 38.9 bits (89), Expect = 0.012
Identities = 47/199 (23%), Positives = 58/199 (29%), Gaps = 25/199 (12%)
Query: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGS 208
PP P G + + G PG G G G K D P Q G PG
Sbjct: 1410 PPGPGE---GGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGE 1466
Query: 209 P----------------LPPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSP 251
P P+ G PG + PG +G G P
Sbjct: 1467 QGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGP 1526
Query: 252 LARASKEAGGSCPGS---AGPGGGGEEDSPGSASPLGSESGSEADKEEG-EAAPAPGLGG 307
R ++ PG GP G + G P G + E G PG G
Sbjct: 1527 TGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPG 1586
Query: 308 GSG-PRQRTPLDILTRVFP 325
G P R P+ + R P
Sbjct: 1587 PKGDPGDRGPIGLTGRAGP 1605
Score = 38.9 bits (89), Expect = 0.012
Identities = 52/171 (30%), Positives = 57/171 (33%), Gaps = 29/171 (16%)
Query: 164 DGGGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PLSPD 220
D G PG P G G G G G E L K AG G P V+ P+
Sbjct: 1617 DPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGK----AGERGLRGAPGVRGPVGEK 1672
Query: 221 GADSGPGTSSPEVRPGSGSENGD-GESFSGSPLARASKEAGGSC----PGSAG------- 268
G PG PGS GD GE P R G+ PG G
Sbjct: 1673 GDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGP 1732
Query: 269 ------PGGGGE---EDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSG 310
PG GE E G P G E+G+ P PGL G SG
Sbjct: 1733 KGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGP-PGLDGRSG 1782
Score = 38.5 bits (88), Expect = 0.016
Identities = 46/149 (30%), Positives = 51/149 (34%), Gaps = 17/149 (11%)
Query: 166 GGPGAGAPAGTGGGAAG--AGGSEAKLQKFDLFPKTLL-QAGRPGSPLPPPVKPLSPDGA 222
G PGA G GG AG G AK + P+ +AGR G P P DG
Sbjct: 2304 GLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDP-----GEDGQ 2358
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
PG + PG G G G P + G PG G PG
Sbjct: 2359 KGAPGPKGFKGDPGVGVPGSPGPP--GPPGVKGDLGLPGL------PGAPGVVGFPGQTG 2410
Query: 283 PLGSESGSEADKEEGEAAPAPGLGGGSGP 311
P G E G A P PG G GP
Sbjct: 2411 PRGEMGQPGPSGERGLAGP-PGREGIPGP 2438
Score = 36.6 bits (83), Expect = 0.060
Identities = 77/295 (26%), Positives = 97/295 (32%), Gaps = 81/295 (27%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG G G GA+G G + + P L G PG LP PV P
Sbjct: 1848 GDPGEDGRKGEKGDSGASGREGRDGPKGERGA-PGILGPQGPPG--LPGPVGP------- 1897
Query: 224 SGPGTSSPEVRPGSGSENGDGESFS----GSPLARASKEAGGSCPG-------------- 265
PG P V G+G + GE+ S G P R + GS P
Sbjct: 1898 --PGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASA 1955
Query: 266 ---------------------SAGP-GGGGEEDSPGSASPLG--SESGSEADKEE----- 296
GP G GE+ PG P+G E G + D+ +
Sbjct: 1956 LREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQG 2015
Query: 297 ------GEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQV 350
GE P PG G +G + + L PG GV E G G+ + E+
Sbjct: 2016 PPGLALGERGP-PGPSGLAGEPGKPGIPGL----PGRAGGVGEAGRPGERGERGEKGERG 2070
Query: 351 LNHHRG--GLAAGLGPAAPPDKAAVGAAAAADDAWP--SRVDAAAAAAAAAGGPG 401
G GL GP PP G + D+ P S A G PG
Sbjct: 2071 EQGRDGPPGLPGTPGPPGPP-----GPKVSVDEPGPGLSGEQGPPGLKGAKGEPG 2120
Score = 36.2 bits (82), Expect = 0.079
Identities = 42/138 (30%), Positives = 47/138 (34%), Gaps = 45/138 (32%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPP-PVKPLSPDGA 222
G PG G G G G GG FP G G P PP V P P+G
Sbjct: 2689 GQPGPKGDQGEKGERGTPGIGG----------FPGPSGNDGSAGPPGPPGSVGPRGPEGL 2738
Query: 223 DSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSAS 282
G P GE G+P PG+ PG GE+ PG A
Sbjct: 2739 QGQKGERGPP-----------GERVVGAP----------GVPGA--PGERGEQGRPGPAG 2775
Query: 283 PLGSESGSEADKEEGEAA 300
P G E+GEAA
Sbjct: 2776 PRG---------EKGEAA 2784
Score = 35.4 bits (80), Expect = 0.13
Identities = 45/161 (27%), Positives = 53/161 (32%), Gaps = 38/161 (23%)
Query: 161 CAADG--GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLS 218
C DG G G P G G AG G + P Q+G PG + P
Sbjct: 2634 CGLDGEKGDKGEAGPPGRPG-LAGHKGEMGE-------PGVPGQSGAPGKE--GLIGPKG 2683
Query: 219 PDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSP 278
G D PG G E G+ R + GG S G G P
Sbjct: 2684 DRGFDGQPGPK------GDQGEKGE----------RGTPGIGGFPGPSGNDGSAGPPGPP 2727
Query: 279 GSASPLGSESGSEADKEEGEAAP-------APGLGGGSGPR 312
GS P G E ++GE P APG+ G G R
Sbjct: 2728 GSVGPRGPEG---LQGQKGERGPPGERVVGAPGVPGAPGER 2765
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 55.5 bits (132), Expect = 1e-07
Identities = 87/302 (28%), Positives = 99/302 (32%), Gaps = 62/302 (20%)
Query: 166 GGPGAGAPAGTGG-----------GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPV 214
G PG P G G GA G G+E P AG PG P
Sbjct: 1045 GLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGP-------PGPPGPAGSPGER--GPA 1095
Query: 215 KPLSPDGADSGPGTSSPEVRPGSGSENG-DGESFSGSPLARASKEAGGSCPGSAGP-GGG 272
P G PG P PG E G GE P R + PG AGP G
Sbjct: 1096 GAAGPIGIPGRPGPQGP---PGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
Query: 273 GEEDSPGSASPLGSESGSEADK-EEGEAAPA-----------PGLGGGSGPRQRTPL--- 317
GE+ G G + GS+ DK E+G P G G GPR + L
Sbjct: 1153 GEDGDKGEIGEPG-QKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQ 1211
Query: 318 --DILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGA 375
D R FPG V LQG G + E G +GP PP
Sbjct: 1212 KGDEGPRGFPGPPGPV---GLQGLPGPPGEKGET-------GDVGQMGPPGPPGPRGPSG 1261
Query: 376 AAAAD--DAWPSRVDAAAAAA-----AAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGA 428
A AD P + A AG PGLP + GP P R + GA
Sbjct: 1262 APGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPG--EGGPPGPKGERGEKGESGPSGA 1319
Query: 429 LG 430
G
Sbjct: 1320 AG 1321
Score = 47.0 bits (110), Expect = 4e-05
Identities = 48/179 (26%), Positives = 60/179 (33%), Gaps = 37/179 (20%)
Query: 166 GGPGAGAPAGT---------GGGAAGAGGSEAKLQKFDLFPKTLLQAGR-----PGSPL- 210
G G P GT GGG AG+ G Q+ + +LQ R P P+
Sbjct: 508 GADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQA--QAILQQARLALRGPAGPMG 565
Query: 211 ----PPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGS 266
P PV P G PG P+ G + G + RA + PG
Sbjct: 566 LTGRPGPVGPPGSGGLKGEPGDVGPQ--GPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQ 623
Query: 267 AGPGGG-------------GEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPR 312
GP G G PG + P G ++GE P GL G GPR
Sbjct: 624 TGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPR-GLPGEPGPR 681
Score = 47.0 bits (110), Expect = 4e-05
Identities = 67/253 (26%), Positives = 79/253 (31%), Gaps = 50/253 (19%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSG 225
G PGA P G GG G K + P + G PG PP K + +SG
Sbjct: 1261 GAPGADGPQGPPGGIGNPGAVGEKGE-----PGEAGEPGLPGEGGPPGPKGERGEKGESG 1315
Query: 226 P-GTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASP 283
P G + P PG G DG S P+ PG GP G E G P
Sbjct: 1316 PSGAAGP---PGPKGPPGDDGPKGSPGPVG---------FPGDPGPPG--EPGPAGQDGP 1361
Query: 284 LGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDV 343
G + + G P G G SGP PG R +G G+
Sbjct: 1362 PGDKGDDGEPGQTGSPGPT-GEPGPSGP-------------PGKRGPPGPAGPEGRQGE- 1406
Query: 344 VQAIEQVLNHHRGGLAAGLGPAAPPDKAA-VGAAAAADDAWPSRVDAAAAAAAAAGGPGL 402
G G PP K +G A P + G PG
Sbjct: 1407 ------------KGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGS 1454
Query: 403 PAP-LQAGPAAPP 414
P P GP PP
Sbjct: 1455 PGPDGPPGPMGPP 1467
Score = 45.8 bits (107), Expect = 1e-04
Identities = 78/298 (26%), Positives = 105/298 (35%), Gaps = 40/298 (13%)
Query: 166 GGPGAGAPAGTGGGAAGAGGSEAKLQKFDL----FPKTLL-QAGRPGSPLPPPVKPLSPD 220
G PG P G G G G + ++ L P+ LL G PG P PP V + D
Sbjct: 646 GDPGPSGPPGPPGDD-GERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGM--D 702
Query: 221 GADSGPGTSSPEVRPGSGSENGD--GESFSGSPLARASKEAGGSC--PGSAG-PGGGGEE 275
G G P+ PG + G+ + G A G PG G PG G
Sbjct: 703 GQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPP 762
Query: 276 DSPGSASPLGSESGSEADKEEGEAA-PAP-GLGGGSGPR--QRTPLDILTRVFPGHRRGV 331
PG P G + G +G P P G+ G G R + T + FPG +
Sbjct: 763 GHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKG-- 820
Query: 332 LELVLQGCGGDVVQAIEQVLN-----HHRGGLAAGLGPAAPP-DKAAVGAAAAADDAWPS 385
++ ++G G++ + + RGG GP PP +K +G +P
Sbjct: 821 -DMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGL--PGYPG 877
Query: 386 R-----------VDAAAAAAAAAGGPGLPAPL-QAGPAAPPHHRPLLAGAMAPGALGS 431
R A G PG P P Q GP P R PG G+
Sbjct: 878 RQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGN 935
Score = 43.5 bits (101), Expect = 5e-04
Identities = 66/271 (24%), Positives = 80/271 (29%), Gaps = 67/271 (24%)
Query: 164 DGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVK-PLSPDGA 222
D G PG PAG G G + G+ GSP P P P G
Sbjct: 1346 DPGPPGEPGPAGQDGPPGDKGDDG--------------EPGQTGSPGPTGEPGPSGPPGK 1391
Query: 223 DSGPGTSSPEVRPGSGSENGDG--------------ESFSGSPLARASKEAGG-----SC 263
PG + PE R G G+ + G P + G
Sbjct: 1392 RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGL 1451
Query: 264 PGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRV 323
PGS GP G P L +SG + +K PGL G GP
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGH------PGLIGLIGP------------ 1493
Query: 324 FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAW 383
PG + + L G G EQ G+ GP PP G
Sbjct: 1494 -PGEQGEKGDRGLPGPQGSSGPKGEQ-------GITGPSGPIGPP-----GPPGLPGPPG 1540
Query: 384 PSRVDAAAAAAAAAGGPGLPAPLQAGPAAPP 414
P ++ G G P P GP PP
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGP--PGPPGPP 1569
Score = 37.7 bits (86), Expect = 0.027
Identities = 83/335 (24%), Positives = 99/335 (29%), Gaps = 48/335 (14%)
Query: 166 GGPGAGAPAGTGG--GAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGAD 223
G PG P G G G GA G T + G G P + D +
Sbjct: 778 GPPGPQGPIGYPGPRGVKGADGIRG-------LKGTKGEKGEDGFPGFKGDMGIKGDRGE 830
Query: 224 SGP----GTSSPEVRPGSGSENGDGESFSGSPLARASKEAGG--SCPGSAGPGGG----- 272
GP G PE G G NGD G P + G PG GP G
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPL-GPPGEKGKLGVPGLPGYPGRQGPKGSIGFPG 889
Query: 273 --------GEEDSPGSASPLGSESGSEADKEEGEAA----PAP-GLGGGSGP----RQRT 315
G +PG P G + E G P P G GG GP +R
Sbjct: 890 FPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERG 949
Query: 316 PLDILTRV-FPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRG--GLAAGLGPAAPP-DKA 371
P FPG + G G Q E G G +GP P +
Sbjct: 950 PNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETG 1009
Query: 372 AVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPL-QAGPAAPPHHRPLLAGAMAPGALG 430
+G P A G G P P G PP R PG +G
Sbjct: 1010 PMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVG 1069
Query: 431 SLSSRSAFSPLQP-----NASHFGADAGAYPLGAP 460
+L + P P + G A P+G P
Sbjct: 1070 ALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIP 1104
Score = 36.6 bits (83), Expect = 0.060
Identities = 71/262 (27%), Positives = 86/262 (32%), Gaps = 51/262 (19%)
Query: 169 GAGAPAGTGGGAAGAGGSEA-KLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPG 227
G G PA G GG K QK + P + PG + P P P G PG
Sbjct: 431 GPGMPANQDTIYEGIGGPRGEKGQKGE--PAII----EPGMLIEGPPGPEGPAGLPGPPG 484
Query: 228 TSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGP--------GGGGEEDSPG 279
T P + G E G P R PG G GGGG+ G
Sbjct: 485 TMGPTGQVGDPGERG--------PPGRPGLPGADGLPGPPGTMLMLPFRFGGGGD---AG 533
Query: 280 SASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGC 339
S P+ S S+A +A A L G +GP T PG L+G
Sbjct: 534 SKGPMVSAQESQAQAILQQARLA--LRGPAGPMGLTGR-------PGPVGPPGSGGLKGE 584
Query: 340 GGDVVQAIEQVLNHHRGGLAAGLGPAAPPDK----AAVGAAAAADDAWPS---RVDAAAA 392
GDV + G+ GPA P + + GA P D A
Sbjct: 585 PGDVGPQGPR-------GVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAG 637
Query: 393 AAAAAGGPGLPAPLQAGPAAPP 414
G G P P +GP PP
Sbjct: 638 LPGEKGHRGDPGP--SGPPGPP 657
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,807,948
Number of Sequences: 37866
Number of extensions: 1820138
Number of successful extensions: 27762
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 1410
Number of HSP's that attempted gapping in prelim test: 13703
Number of HSP's gapped (non-prelim): 9827
length of query: 542
length of database: 18,247,518
effective HSP length: 107
effective length of query: 435
effective length of database: 14,195,856
effective search space: 6175197360
effective search space used: 6175197360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.