Guide to the Human Genome
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Name: DMRTB1 Sequence: fasta or formatted (342aa) NCBI GI: 24308352
Description:

DMRT-like family B with proline-rich C-terminal, 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         34           5
 C cysteine            2.6          9           1
 D aspartate           4.1         14           2
 E glutamate           5.0         17           3
 F phenylalanine       3.8         13           2
 G glycine             9.4         32           3
 H histidine           1.8          6           1
 I isoleucine          0.9          3           1
 K lysine              3.2         11           1
 L leucine             8.8         30           1
 M methionine          1.8          6           1
 N asparagine          1.5          5           1
 P proline            18.7         64           9
 Q glutamine           5.8         20           2
 R arginine            5.6         19           2
 S serine              7.3         25           2
 T threonine           2.3          8           1
 V valine              4.7         16           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DMRT-like family B with proline-rich C-terminal, 1 [... 
DMRTA2                0.107   DMRT-like family A2 
DMRT3                 0.094   doublesex and mab-3 related transcription factor 3 [...
DMRTA1                0.091   DMRT-like family A1 
DMRT1                 0.089   doublesex and mab-3 related transcription factor 1 [...
DMRT2                 0.079   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.079   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.079   doublesex and mab-3 related transcription factor 2 ...
DMRTC2                0.070   DMRT-like family C2 
DIAPH1                0.064   diaphanous 1 isoform 2 
DIAPH1                0.064   diaphanous 1 isoform 1 
FMN2                  0.064   formin 2 
FLJ22184              0.057   PREDICTED: hypothetical protein LOC80164 
CPSF6                 0.054   cleavage and polyadenylation specific factor 6, 68 ...
MBD6                  0.050   methyl-CpG binding domain protein 6 
FUSSEL18              0.049   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.049   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.049   PREDICTED: functional smad suppressing element 18 [...
SETD1B                0.047   SET domain containing 1B 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
PELP1                 0.047   proline, glutamic acid and leucine rich protein 1 [...
ZFHX4                 0.047   zinc finger homeodomain 4 
SF1                   0.046   splicing factor 1 isoform 1 
COL17A1               0.046   alpha 1 type XVII collagen 
GLTSCR1               0.046   glioma tumor suppressor candidate region gene 1 [Ho...
SSBP3                 0.046   single stranded DNA binding protein 3 isoform a [Hom...
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
APBB1IP               0.046   amyloid beta (A4) precursor protein-binding, family ...
WIPF3                 0.046   WAS/WASL interacting protein family, member 3 [Homo...
SF1                   0.046   splicing factor 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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