Guide to the Human Genome
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Name: DMRT1 Sequence: fasta or formatted (373aa) NCBI GI: 62241026
Description:

doublesex and mab-3 related transcription factor 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         34           2
 C cysteine            2.7         10           1
 D aspartate           2.7         10           1
 E glutamate           5.6         21           3
 F phenylalanine       2.7         10           2
 G glycine             9.1         34           3
 H histidine           1.9          7           1
 I isoleucine          1.9          7           1
 K lysine              3.8         14           2
 L leucine             5.9         22           2
 M methionine          2.7         10           1
 N asparagine          4.3         16           2
 P proline            10.7         40           3
 Q glutamine           4.8         18           2
 R arginine            4.8         18           2
 S serine             14.5         54           4
 T threonine           3.5         13           2
 V valine              5.1         19           1
 W tryptophan          0.5          2           1
 Y tyrosine            3.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   doublesex and mab-3 related transcription factor 1 [... 
DMRTA1                0.135   DMRT-like family A1 
DMRTA2                0.133   DMRT-like family A2 
DMRT2                 0.131   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.131   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.131   doublesex and mab-3 related transcription factor 2 ...
DMRT3                 0.101   doublesex and mab-3 related transcription factor 3 [...
DMRTB1                0.084   DMRT-like family B with proline-rich C-terminal, 1 [...
DMRTC2                0.082   DMRT-like family C2 
BHLHE22               0.023   basic helix-loop-helix domain containing, class B, 5...
KRT10                 0.020   keratin 10 
CADPS                 0.020   Ca2+-dependent secretion activator isoform 2 
CADPS                 0.020   Ca2+-dependent secretion activator isoform 1 
CADPS                 0.020   Ca2+-dependent secretion activator isoform 3 
NHSL1                 0.020   NHS-like 1 
MAF                   0.020   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.020   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
SOX3                  0.019   SRY (sex determining region Y)-box 3 
RFX1                  0.018   regulatory factor X1 
GSK3A                 0.018   glycogen synthase kinase 3 alpha 
CACNG8                0.018   voltage-dependent calcium channel gamma-8 subunit [H...
KRT9                  0.018   keratin 9 
CITED2                0.018   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
KRT2                  0.018   keratin 2 
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
RING1                 0.016   ring finger protein 1 
ADRA1D                0.016   alpha-1D-adrenergic receptor 
ANKHD1                0.016   ankyrin repeat and KH domain containing 1 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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